View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_80 (Length: 247)
Name: NF16904_high_80
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_80 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 14303920 - 14304150
Alignment:
| Q |
1 |
gtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303920 |
gtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttcacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaa |
14304019 |
T |
|
| Q |
101 |
actgttgaatcttgttcccgaagtactcttcccatgcttgaaatttaatcacacgcatgttgttaagcaactcattcgtcgacttcattctcgaatcgcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14304020 |
actgttgaatcttgttcccgaagtactcttcccacgcttgaaatttaatcacacgcatgttgttaagcaactcattcgttgacttcattctcgaatcgcg |
14304119 |
T |
|
| Q |
201 |
gctcatcattatccgaaactgaaaaacatta |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
14304120 |
gctcatcattatccgaaactgaaaaacatta |
14304150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 14282200 - 14282386
Alignment:
| Q |
39 |
tcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcccatgct |
138 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
14282200 |
tcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttaccgaagtactcttcccacgct |
14282299 |
T |
|
| Q |
139 |
tgaaatttaatcacacgcatgttgttaagcaactcattcgtcgacttcattctcgaatcgcggctcatcattatccgaaactgaaaa |
225 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||| |||||||| ||||||||||| |
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| T |
14282300 |
tgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaaa |
14282386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 14320311 - 14320523
Alignment:
| Q |
1 |
gtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaa |
100 |
Q |
| |
|
||||||||||||| |||||| || | |||| ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| || ||||| |||| |
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| T |
14320311 |
gtaagaacagttacagctaatggggcagtacccaaaactcctatgttaactgcaaaatagtacaagaatttcgcaatccatccatgctcagcttcgcgaa |
14320410 |
T |
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| Q |
101 |
actgttgaatcttgttcccgaagtactcttcccatgcttgaaatttaatcacacgcatgttgttaagcaactcattcgtcgacttcattctcgaatcgcg |
200 |
Q |
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|
|||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || |||| |||||| ||||||||||| |
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| T |
14320411 |
actgttgaattttgttaccaaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagtaactcgtttgtcgccttcatcctcgaatcgcg |
14320510 |
T |
|
| Q |
201 |
gctcatcattatc |
213 |
Q |
| |
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|||| |||||||| |
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| T |
14320511 |
gctcgtcattatc |
14320523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 25884993 - 25885216
Alignment:
| Q |
1 |
gtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaa |
100 |
Q |
| |
|
||||||||||||| | |||| || | || || ||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| |
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| T |
25884993 |
gtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatgaatttcccaatccatccatgctcggattcacgaa |
25885092 |
T |
|
| Q |
101 |
actgttgaatcttgttcccgaagtactcttcccatgcttgaaatttaatcacacgcatgttgttaagcaactcattcgtcgacttcattctcgaatcgcg |
200 |
Q |
| |
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|||||| ||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |
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| T |
25885093 |
actgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcgaatcgcg |
25885192 |
T |
|
| Q |
201 |
gctcatcattatccgaaactgaaa |
224 |
Q |
| |
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|| |||| ||| |||||||||| |
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| T |
25885193 |
acttgtcatcatctgaaactgaaa |
25885216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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