View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_10 (Length: 586)
Name: NF16904_low_10
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 14 - 567
Target Start/End: Original strand, 42910794 - 42911348
Alignment:
| Q |
14 |
atcatcattagaaaatattatgtggtctatagatttataatgagctgtccaagtcttcaacaattttccactagtcacctacaattcatcattaacaaca |
113 |
Q |
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| T |
42910794 |
atcatcattagaaaatattatgtggtctacagatttataatgagctgtccaagtcttcaacaattttccactagtcacctacaattcatcataaacaaca |
42910893 |
T |
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| Q |
114 |
caatttcacaaacaaaataatctaaatatagcattaaaccttacatgtaagggagtcttaggatcaaatttttgatcaaacattcacccattttaagtca |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910894 |
caatttcacaaacaaaataatccaaatatagcattaaaccttacatgtaagggagtcttaggatcaaatttttgatcaaacattcacccattttaagtca |
42910993 |
T |
|
| Q |
214 |
tattcaataaactattatactcaaaatgtctaattgaggaaatagctaggtttttggatgtttaattagc-nnnnnnntaaaattagacaaatcaaataa |
312 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42910994 |
tattcaataaattattatactcaaaatgtctaattgaggaaatagctaggtttttggatgtttaattagcaaaaaaaataaaattagacaaatcaaataa |
42911093 |
T |
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| Q |
313 |
ttgaaggtttgcatacatacatcccagatataagcagttccagataaagcacctcccacaaggtatatgccttcttttgtgcaagaaagtggcccaatgg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911094 |
ttgaaggtttgcatacatacatcccagatataagcagttccagataaagcacctcccacaaggtatatgccttcttttgtgcaagaaagtggcccaatgg |
42911193 |
T |
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| Q |
413 |
cttccactgtgtaattcaaaagtggttgttgcggctgaaataataaaatataagtnnnnnnntagagattttgacatgatatttagtttaaaagatataa |
512 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
42911194 |
cctccactgtgtaattcaaaagtggttgttgcggctgaaataataaaatataagtaaaaaaatagagattttgacatgatatttaatttaaaagatataa |
42911293 |
T |
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| Q |
513 |
aatgcaatattttggtcataattattgaactttcatggtagtatatgctagtaag |
567 |
Q |
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| T |
42911294 |
aatgcaatattttggtcataattattgaactttcatggtagtatatgctagtaag |
42911348 |
T |
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