View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_100 (Length: 233)
Name: NF16904_low_100
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_100 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 51911648 - 51911420
Alignment:
| Q |
5 |
catcatcataaaatttctaacaagctttgtttttcctatgtaactataaataagagattgcatacatcacaatcttgcatgcagagatttctaacagaat |
104 |
Q |
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| T |
51911648 |
catcatcataaaatttctaacaagctttgtttttcctatgtaactataaataagagattgcatacatcacaatcttgcatgcagagatttctaacagaat |
51911549 |
T |
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| Q |
105 |
tataattttgaaacaacacacttcatcattatatcttaccttgctgtctacgtgaaacattggaataaatcaatgtcggattggtactttttctacactt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51911548 |
tataattttgaaacaacacacttcatcattatatcttaccttgctgtctacgtgaaacattggaataaatcaatgtcggattggtactttttctacactt |
51911449 |
T |
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| Q |
205 |
tttctttactagtaaattatttacttcat |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
51911448 |
tttctttactagtaaattatttacttcat |
51911420 |
T |
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