View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_102 (Length: 217)
Name: NF16904_low_102
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_102 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 41382347 - 41382153
Alignment:
| Q |
1 |
ttatcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattggg |
100 |
Q |
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| T |
41382347 |
ttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattggg |
41382248 |
T |
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| Q |
101 |
ccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
195 |
Q |
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| T |
41382247 |
ccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
41382153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 43853134 - 43853201
Alignment:
| Q |
9 |
tcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacg |
76 |
Q |
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| T |
43853134 |
tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacg |
43853201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 8041743 - 8041934
Alignment:
| Q |
4 |
tcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggcca |
103 |
Q |
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| T |
8041743 |
tcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggca |
8041842 |
T |
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| Q |
104 |
acatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
195 |
Q |
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| T |
8041843 |
acatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccg |
8041934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 7971943 - 7971754
Alignment:
| Q |
6 |
ctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaac |
105 |
Q |
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| T |
7971943 |
ctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaac |
7971844 |
T |
|
| Q |
106 |
atgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
195 |
Q |
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| T |
7971843 |
atgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccg |
7971754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 8031869 - 8032055
Alignment:
| Q |
9 |
tcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatg |
108 |
Q |
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||||||| ||||||||| || || |||||||||||||||||||||||||| ||| |||||||||||||| |||||| ||| ||||||| || ||||||| |
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| T |
8031869 |
tcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaattaggtcaacatg |
8031968 |
T |
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| Q |
109 |
cgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
195 |
Q |
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| T |
8031969 |
cgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccg |
8032055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 7979511 - 7979324
Alignment:
| Q |
6 |
ctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaac |
105 |
Q |
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||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||| || |||| |
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| T |
7979511 |
ctttcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaac |
7979412 |
T |
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| Q |
106 |
atgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcac |
193 |
Q |
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| T |
7979411 |
atgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcac |
7979324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 3463 - 3277
Alignment:
| Q |
9 |
tcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatg |
108 |
Q |
| |
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||||||||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||||||| |||||| || ||||| |||| ||||| | |
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| T |
3463 |
tcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaactgggacaacacg |
3364 |
T |
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| Q |
109 |
cgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
195 |
Q |
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| T |
3363 |
cgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggggtgaacattgtttacatggtcaccg |
3277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 14198910 - 14198719
Alignment:
| Q |
4 |
tcctttcatggatcatcactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggcca |
103 |
Q |
| |
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|||| |||||| ||||||| | ||||| || ||||||||||||||||||||||| ||||| || || |||||| | |||| |||| ||||| |||| || |
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| T |
14198910 |
tcctctcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtca |
14198811 |
T |
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| Q |
104 |
acatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
195 |
Q |
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| T |
14198810 |
atatgcttttggtgaaaagttgggtctgtatattgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccg |
14198719 |
T |
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