View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_105 (Length: 205)
Name: NF16904_low_105
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 8567283 - 8567113
Alignment:
| Q |
18 |
taggaaaactcattctcatctcatttgtccattctttttaatttcattaggcacatgtatgactcatgacattggatgcttgtttatgagtatgcaaatt |
117 |
Q |
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| T |
8567283 |
taggaaaactcattctcatctcatttgtcc-ttctttttaatttcattaggcacatgtatgactcatgacattggatgcttgtttatgagtatgcaaatt |
8567185 |
T |
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| Q |
118 |
ctatttttgaaccgtttttcttatactttccctcacactcatatattaccaaagaaaatcatgcctatcaca |
189 |
Q |
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| T |
8567184 |
ctatttttgaaccgtttttcttatactttccctcacactcatatattaccaaagaaaatcatgcctatcaca |
8567113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 8556970 - 8557132
Alignment:
| Q |
22 |
aaaactcattctcatctcatttgtccattctttttaatttcattaggcacatgtatgactcatgacattggatgcttgtttatgagtat-gcaaattcta |
120 |
Q |
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| T |
8556970 |
aaaactcattctcatctcatttatcc-ttcttttgaatttgaataggcacatg----actcatgacattggaggcttgtttgtgagtattgca--ttcta |
8557062 |
T |
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| Q |
121 |
tttttgaaccgtttttcttatactttccctcac-actcatatattaccaaagaaaatcatgcctatcaca |
189 |
Q |
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| T |
8557063 |
tttttgaaccgtttttctcatacttccccttacgtctcatttctcacccaagaaaataatgcctatcaca |
8557132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 8611842 - 8611928
Alignment:
| Q |
115 |
attctatttttgaaccgtttttcttatactttccctcac-actcatatattaccaaagaaaatcatgcctatcacaggttctgctcg |
200 |
Q |
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| T |
8611842 |
attctatttttgaaccgtttttctcatactttccctcacgtctcacttattacccaagaaaatcatgcctatcacatgttttgctcg |
8611928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 8646808 - 8646722
Alignment:
| Q |
115 |
attctatttttgaaccgtttttcttatactttccctcac-actcatatattaccaaagaaaatcatgcctatcacaggttctgctcg |
200 |
Q |
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| T |
8646808 |
attctatttttgaaccgtttttctcatactttccctcacgtctcacttattacccaagaaaatcatgcctatcacatgttttgctcg |
8646722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 8594582 - 8594496
Alignment:
| Q |
115 |
attctatttttgaaccgtttttcttatactttccctcac-actcatatattaccaaagaaaatcatgcctatcacaggttctgctcg |
200 |
Q |
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| T |
8594582 |
attctatttttgaaccgtttttctcatactttcccttacgtctcatttctcacccaagaaaatcatgcctatcacatgttttgctcg |
8594496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 8555752 - 8555677
Alignment:
| Q |
22 |
aaaactcattctcatctcatttgtccattctttttaatttcattaggcacatgtatgactcatgacattggatgcttgttt |
102 |
Q |
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| T |
8555752 |
aaaactcattctcatctcatttgtcc-ttcatttgaatttgaataggcac----atgactcatgacattggaggcttgttt |
8555677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 8632927 - 8632870
Alignment:
| Q |
81 |
tcatgacattggatgcttgtttatgagtatgcaaattctatttttgaaccgtttttct |
138 |
Q |
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| T |
8632927 |
tcatggcattggatgcttgtttgtgagtatgtacattctacttctgaaccgtttttct |
8632870 |
T |
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