View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_106 (Length: 204)
Name: NF16904_low_106
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_106 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 36606159 - 36606327
Alignment:
| Q |
14 |
caaagggttaatagtgttttacctgtgtaatatagagcatttttggttttgtcccttgtgatataaggttcattaaactttttcagaaaccgagtacaca |
113 |
Q |
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| T |
36606159 |
caaagggttaatagtgttttatccgtgtaatataaagcatttttggttttgtcccctgcaatatagggttcattaaactttttcacaaacccagtacaca |
36606258 |
T |
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| Q |
114 |
cattcattgtgttcatgttcttgtttcttcacaaactgaaaccttcataccacaatcccaaaattcatg |
182 |
Q |
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| T |
36606259 |
cattaattgtgttcatgttcttgtttcttcacaaactcaaaccttcataccacaatcccaaaattcatg |
36606327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 9410340 - 9410288
Alignment:
| Q |
18 |
gggttaatagtgttttacc--tgtgtaatatagagcatttttggttttgtccc |
68 |
Q |
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| T |
9410340 |
gggttaatagtgttttacccctctgtaatatagggcacttttggttttgtccc |
9410288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 3370277 - 3370232
Alignment:
| Q |
18 |
gggttaatagtgttttacctgtgtaatatagagcatttttggtttt |
63 |
Q |
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| T |
3370277 |
gggttaacagtgttttacctttgtaatatagagcatttttgatttt |
3370232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 45161440 - 45161391
Alignment:
| Q |
15 |
aaagggttaatagtgttttacctgtgtaatatagagcatttttggttttg |
64 |
Q |
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| T |
45161440 |
aaagggttaatagtgttttacccctgtaatatagggcacttttggttttg |
45161391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 36795152 - 36795201
Alignment:
| Q |
14 |
caaagggttaatagtgttttacctgtgtaatatagagcatttttggtttt |
63 |
Q |
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||||||||||||||||||||||| |||||||||| |||||| |||||| |
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| T |
36795152 |
caaagggttaatagtgttttacccctgtaatataggtcattttcggtttt |
36795201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 42509097 - 42509048
Alignment:
| Q |
16 |
aagggttaatagtgtttta-cctgtgtaatatagagcatttttggttttg |
64 |
Q |
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| T |
42509097 |
aagggttaatagtgttttaccctctgtaatatagggcacttttggttttg |
42509048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 31750718 - 31750766
Alignment:
| Q |
16 |
aagggttaatagtgtttta-cctgtgtaatatagagcatttttggtttt |
63 |
Q |
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||||||||||||||||||| ||| ||||||||||| |||||| |||||| |
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| T |
31750718 |
aagggttaatagtgttttaccctttgtaatatagatcattttcggtttt |
31750766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 20159026 - 20158973
Alignment:
| Q |
15 |
aaagggttaatagtgttttacctgtgtaatatagagcatttttggttttgtccc |
68 |
Q |
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|||||||||||||||||||||| |||||||||| |||||| |||||| |||| |
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| T |
20159026 |
aaagggttaatagtgttttacccctgtaatataggtcattttcggttttatccc |
20158973 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 33750915 - 33750967
Alignment:
| Q |
15 |
aaagggttaatagtgtttt-acctgtgtaatatagagcatttttggttttgtc |
66 |
Q |
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||||||||||||||||||| ||| |||||||||||||| ||||| ||||||| |
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| T |
33750915 |
aaagggttaatagtgttttaacccttgtaatatagagcacttttgattttgtc |
33750967 |
T |
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