View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_107 (Length: 201)
Name: NF16904_low_107
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_107 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 33001235 - 33001068
Alignment:
| Q |
18 |
ttcataggtgcataccaaggctaggaatcacgaaaatagacaaacaaacaacatcaccatattcaatctgaattaagtaatcctctaaaagaaaatccca |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33001235 |
ttcataggtgcagaccaaggctaggaatcacgaaaatagacaaacaaacaacatcaccatattcaatctgaattaagtaattctctaaaagaaaatccca |
33001136 |
T |
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| Q |
118 |
aaaagtaccatctgaaaacaaaattccaaatccaggtaattccatttcttaaattccactcacattat |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33001135 |
aaaagtaccatctgaaaacaaaattccaaatccaggtaattccatttcttaaattccactcacattat |
33001068 |
T |
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Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 15283461 - 15283596
Alignment:
| Q |
50 |
aaaatagacaaacaaacaacatcaccatattcaatctgaattaagtaatcctctaaaagaaaatcccaaaaagtaccatctgaaaacaaaattccaaatc |
149 |
Q |
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||||||| |||||||||||||||| || ||||||||||||| ||||||| ||| | | |||||||||||| || |||||||||||||| ||||||||| |
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| T |
15283461 |
aaaatagccaaacaaacaacatcatcagattcaatctgaataaagtaattctcaacaggaaaatcccaaacagctccatctgaaaacaatattccaaatt |
15283560 |
T |
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| Q |
150 |
caggtaattccatttcttaaattccactcacattat |
185 |
Q |
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|||| ||||||||||||| ||||||||||||||||| |
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| T |
15283561 |
caggcaattccatttcttcaattccactcacattat |
15283596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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