View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_11 (Length: 572)

Name: NF16904_low_11
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_11
NF16904_low_11
[»] chr6 (5 HSPs)
chr6 (13-247)||(31255151-31255385)
chr6 (264-517)||(31255414-31255668)
chr6 (13-132)||(31245997-31246126)
chr6 (13-132)||(31236605-31236735)
chr6 (352-380)||(23633366-23633394)
[»] chr8 (1 HSPs)
chr8 (312-380)||(5359338-5359406)
[»] chr7 (3 HSPs)
chr7 (305-380)||(30941178-30941253)
chr7 (352-385)||(17500692-17500725)
chr7 (352-385)||(17552489-17552522)
[»] chr5 (1 HSPs)
chr5 (348-388)||(31708362-31708402)
[»] chr3 (2 HSPs)
chr3 (352-380)||(5340101-5340129)
chr3 (348-384)||(23869006-23869042)
[»] chr1 (1 HSPs)
chr1 (352-384)||(30530442-30530474)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 31255151 - 31255385
Alignment:
Q  13 aagaaaataggatatagggtctaaaattaaaaatgttgttgaaaatgatgtgcttttgtgtaacgacttggcatattaattttcaaatattacactgttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31255151 aagaaaataggatatagggtctaaaattaaaaatgttgttgaaaatgatgtgcttttgtgtaacgacttggcatattaattttcaaatattacactgttt 31255250  T
Q  113 ggtgattgtgaccattgactatcattgttatggaaaaatattattttacatccatcatcataggatagaaatgaagagagtttatgataaatatacaacg 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31255251 ggtgattgtgaccattgactatcattgttatggaaaaatatttttttacatccatcatcataggatagaaatgaagagagtttatgataaagatacaacg 31255350  T
Q  213 agtatttttatttgatcaaccatttgaaacaactt 247  Q
    |||||||||||||||||||||||||||||||||||    
T  31255351 agtatttttatttgatcaaccatttgaaacaactt 31255385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 264 - 517
Target Start/End: Original strand, 31255414 - 31255668
Alignment:
Q  264 aattgatcaaaaatagtaaagagaaaaatgaaggnnnnnnn-taagaacataatataagtatttgagagaaagttatcnnnnnnntgttataaagtggtt 362  Q
    ||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||| ||       ||| |||||||||||    
T  31255414 aattgatcaaaaatagtaaagagaaaattgaaggaaaaaaaataagaacataatataagtatttgagagaaagttgtcaaaaaaatgtcataaagtggtt 31255513  T
Q  363 gtagaaatatcatttctcatatacaatataatagtgaaaaacacataaagataaagaaaatgaagtgttgattgggtgtttgagaattaagcgtatcaaa 462  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31255514 gtagaaatatcatttcttatatataatataatagtgaaaaacacataaagataaagaaaatgaagtgttgattgggtgtttgagaattaagcgtatcaaa 31255613  T
Q  463 atacaagggttgcattgcattcttatggaacaaggaaccttgatcttattttatt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31255614 atacaagggttgcattgcattcttatggaacaaggaaccttgatcttattttatt 31255668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 31245997 - 31246126
Alignment:
Q  13 aagaaaataggatatagggtctaaaattaaaaatgttgttgaaaatgatgtgctt-----------ttgtgtaacgacttggcatattaattttcaaata 101  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||           |  |||||| ||||||||| | ||||||||||||    
T  31245997 aagaaaataggatatagggtctaaaattaaaaatgttgttg-aaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaata 31246095  T
Q  102 ttacactgtttggtgattgtgaccattgact 132  Q
    | ||||| |||||||||||||||||||||||    
T  31246096 taacactatttggtgattgtgaccattgact 31246126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 31236605 - 31236735
Alignment:
Q  13 aagaaaataggatatagggtctaaaattaaaaatgttgttgaaaatgatgtgctt-----------ttgtgtaacgacttggcatattaattttcaaata 101  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||           |  |||||| ||||||||| | ||||||||||||    
T  31236605 aagaaaataggatatagagcctaaagttaaaaatgttgttgaaaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaata 31236704  T
Q  102 ttacactgtttggtgattgtgaccattgact 132  Q
    | ||||| || ||||||||||||||||||||    
T  31236705 taacactattcggtgattgtgaccattgact 31236735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 380
Target Start/End: Original strand, 23633366 - 23633394
Alignment:
Q  352 ataaagtggttgtagaaatatcatttctc 380  Q
    |||||||||||||||||||||||||||||    
T  23633366 ataaagtggttgtagaaatatcatttctc 23633394  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 5359406 - 5359338
Alignment:
Q  312 ataatataagtatttgagagaaagttatcnnnnnnntgttataaagtggttgtagaaatatcatttctc 380  Q
    ||||||||||||| |||||||||||||||       ||| ||||||| |||||| ||||||||||||||    
T  5359406 ataatataagtatgtgagagaaagttatcaaaaaattgtcataaagtagttgtataaatatcatttctc 5359338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 30941253 - 30941178
Alignment:
Q  305 taagaacataatataagtatttgagagaaagttatcnnnnnnntgttataaagtggttgtagaaatatcatttctc 380  Q
    |||||| ||||||| |||||  ||||||||||||||       ||||| |||||||||||| ||||||||||||||    
T  30941253 taagaatataatatgagtataagagagaaagttatctaaaaattgttacaaagtggttgtacaaatatcatttctc 30941178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 17500725 - 17500692
Alignment:
Q  352 ataaagtggttgtagaaatatcatttctcatata 385  Q
    |||||||||||||| |||||||||||||||||||    
T  17500725 ataaagtggttgtacaaatatcatttctcatata 17500692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 17552489 - 17552522
Alignment:
Q  352 ataaagtggttgtagaaatatcatttctcatata 385  Q
    |||||||||||||| |||||||||||||||||||    
T  17552489 ataaagtggttgtacaaatatcatttctcatata 17552522  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 31708402 - 31708362
Alignment:
Q  348 tgttataaagtggttgtagaaatatcatttctcatatacaa 388  Q
    ||||||||| |||||||| ||||||||||||||| ||||||    
T  31708402 tgttataaaatggttgtacaaatatcatttctcaaatacaa 31708362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 380
Target Start/End: Complemental strand, 5340129 - 5340101
Alignment:
Q  352 ataaagtggttgtagaaatatcatttctc 380  Q
    |||||||||||||||||||||||||||||    
T  5340129 ataaagtggttgtagaaatatcatttctc 5340101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 23869006 - 23869042
Alignment:
Q  348 tgttataaagtggttgtagaaatatcatttctcatat 384  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  23869006 tgttataaaatggttgtacaaatatcatttctcatat 23869042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 30530442 - 30530474
Alignment:
Q  352 ataaagtggttgtagaaatatcatttctcatat 384  Q
    |||||||||||||| ||||||||||||||||||    
T  30530442 ataaagtggttgtacaaatatcatttctcatat 30530474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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