View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_12 (Length: 572)
Name: NF16904_low_12
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Complemental strand, 36423003 - 36422467
Alignment:
| Q |
11 |
cacagaggctttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaactg |
110 |
Q |
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| T |
36423003 |
cacagaggctttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaactg |
36422904 |
T |
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| Q |
111 |
tttgaggacttaaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcggatt |
210 |
Q |
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| T |
36422903 |
tttgaggacttaaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcggatt |
36422804 |
T |
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| Q |
211 |
catggtttggttgttgatggcgagtggagaaggatggtttgtggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaagatgtt |
310 |
Q |
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| T |
36422803 |
catggtttggttgttgacggcgagtggagaaggatggtttgtggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaagatgtt |
36422704 |
T |
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| Q |
311 |
gcagtctagagcttctttgttgaatgatgatggaaggtgaaaccaggtagcaagtataactagtgctataccaaatgaaaaaaccaggaacttcaacaaa |
410 |
Q |
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| T |
36422703 |
gcagtctagagcttctttgttgaatgatgaaggaaggtgaaaccaggtagcaagtataactagtgctataccaaatgaaaaaaccaggaacttcaacaaa |
36422604 |
T |
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| Q |
411 |
tttctagcatccatgttagtttgtgtagaaattacacagagagggtgtactatatagtgctgaataatacacaggatgcaagtttcacacacgtgaatat |
510 |
Q |
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| T |
36422603 |
tttctagcatccatgttagtttgtgtagaaattacacagagagggtgtactatatagtgctgaataatacacaggatgcaagtttcacacacgtgaatat |
36422504 |
T |
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| Q |
511 |
aaattgtcagagacttgtaacaatgggacaaaagtaa |
547 |
Q |
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| T |
36422503 |
aaattgtcagagacttgtaacaatgggacaaaagtaa |
36422467 |
T |
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