View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_15 (Length: 535)
Name: NF16904_low_15
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 213 - 494
Target Start/End: Original strand, 35219455 - 35219736
Alignment:
| Q |
213 |
tatcaaggtagtgtacatatcaaaccctatgaaggttaagactagtgcctctgaatttagggcactggtccaagaactcaccggtcagtacgctgaatcg |
312 |
Q |
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| T |
35219455 |
tatcaaggtagtgtacatatcaaaccctatgaaggttaagactagtgcctctgaatttagggcactggtccaagaactcaccggtcagtacgctgaatcg |
35219554 |
T |
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| Q |
313 |
ccgccaaacccttccaggtttcaagagtttgacgtcgatgatagcggtactgacccgggtggttgtgagaataggatggattgtgataaaagtgatcaaa |
412 |
Q |
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| T |
35219555 |
ccgccaaacccttctaggtttcaagagtttgacgtcaatgatagcggtactgaccagggtggttgtgagaatatgatggattgtgataaaagtgatcaaa |
35219654 |
T |
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| Q |
413 |
cagttgtgggggtgccttctcttgtggatcccgatgataaagggaaacctagtgaagctggctcatcaaatgagagttttga |
494 |
Q |
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| T |
35219655 |
cagttgtgggggtgccttctcttgtggatcccgatgataaagggaaacctagtgaagctggctcatcaaatgagagttttga |
35219736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 35219243 - 35219382
Alignment:
| Q |
1 |
cccttcattacatttacacgttcagttgttatctttaaaccaaacccgaaaacaacagtaccaagtttttgtcattctttgctagaaactatggactcta |
100 |
Q |
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| T |
35219243 |
cccttcattacatttacacgttcagttgttatctttaaaccaaacccgaaaacaacagtaccaagtttttgtcattctttgctagaaactatggactcta |
35219342 |
T |
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| Q |
101 |
tcagcacaagtagcaccagttcatcagtgattagtactgt |
140 |
Q |
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| T |
35219343 |
tcagcacaagtagcaccagttcatcagtgattagtactgt |
35219382 |
T |
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