View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_16 (Length: 535)

Name: NF16904_low_16
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_16
NF16904_low_16
[»] chr7 (2 HSPs)
chr7 (11-520)||(42551249-42551757)
chr7 (386-480)||(42547385-42547480)
[»] chr5 (2 HSPs)
chr5 (72-152)||(14063587-14063667)
chr5 (77-140)||(39584040-39584103)
[»] chr3 (1 HSPs)
chr3 (72-153)||(38219940-38220021)
[»] chr6 (1 HSPs)
chr6 (77-156)||(7779856-7779935)
[»] chr4 (2 HSPs)
chr4 (121-156)||(32285311-32285346)
chr4 (119-153)||(38228252-38228286)
[»] chr8 (1 HSPs)
chr8 (100-142)||(8274249-8274291)
[»] chr2 (2 HSPs)
chr2 (116-156)||(37273211-37273251)
chr2 (77-133)||(40702823-40702879)


Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Original strand, 42551249 - 42551757
Alignment:
Q  11 taatacttcaaaaatgttcaaaactcaaatgaggacttgatagtataggtcataatggccatcctcatttttacgattgaaataaagacttaattaatgt 110  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| |||||||   ||||||||||||||| |||||||||| ||||||||||||||    
T  42551249 taatactttaaaaatgttcaaaactcaaatgaggatttgatagtatagatcataataatcatcctcatttttacaattgaaataatgacttaattaatgt 42551348  T
Q  111 taatatgattaaaacaacgaaaaataaatatataacttgtattaaattgatttcaatcaaatcaccatcatagtgactatgtttaaaatttcaaataatt 210  Q
    || |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42551349 tagtatgattaaaacaacggaaaataaatatataactcgtattaaattgatttcaatcaaatcaccatcatagtgaccatgtttaaaatttcaaataatt 42551448  T
Q  211 ttggtgttgaactgacctcaatgttaacttctcaaaaaatgggactaaacatgcatttagaaatgaattaattaatactctagtcatagtattcaaaagt 310  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551449 ttggtgttgaactgacctcaatgttaact-ctaaaaaaatgggactaaacatgcatttagaaatgaattaattaatactctagtcatagtattcaaaagt 42551547  T
Q  311 aagaaagtgactctttaattttttatgtaatagcccttatcatgtcatgttattttagccaaagataatgctataagtcagtattacttcaccttgcaca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551548 aagaaagtgactctttaattttttatgtaatagcccttatcatgtcatgttattttagccaaagataatgctataagtcagtattacttcaccttgcaca 42551647  T
Q  411 atagccaagtcctcttatacatagcacccatcatatatctatatccctcccttatatcttatctttctgaaattaatgttcctttgaggtgatttagatt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551648 atagccaagtcctcttatacatagcacccatcatatatctatatccctcccttatatcttatctttctgaaattaatgttcctttgaggtgatttagatt 42551747  T
Q  511 tacaactaac 520  Q
    ||||||||||    
T  42551748 tacaactaac 42551757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 42547385 - 42547480
Alignment:
Q  386 agtcagtattacttcaccttgcacaatagccaagtcctcttatacatagcacccatcatatatctatatccc-tcccttatatcttatctttctga 480  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||| ||||    
T  42547385 agtcattattacttcaccttgcacgatagccaattcctcttatacataacacccttcatatatctatatccctttccttatatcttatcttcctga 42547480  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 14063667 - 14063587
Alignment:
Q  72 tcctcatttttacgattgaaataaagacttaattaatgttaatatgattaaaacaacgaaaaataaatatataacttgtat 152  Q
    ||||||||||||| |||||||||| | | ||||| || | | | |||||||||||||||||||||||||||||||| ||||    
T  14063667 tcctcatttttacaattgaaataatggcgtaattgatataagtttgattaaaacaacgaaaaataaatatataactcgtat 14063587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 39584040 - 39584103
Alignment:
Q  77 atttttacgattgaaataaagacttaattaatgttaatatgattaaaacaacgaaaaataaata 140  Q
    ||||||||||||||||||| ||||||||| ||  | || |||||||||||| | ||||||||||    
T  39584040 atttttacgattgaaataatgacttaattgatactgatttgattaaaacaatggaaaataaata 39584103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 38219940 - 38220021
Alignment:
Q  72 tcctcatttttacgattgaaataaagacttaattaatgttaatatgattaaaacaacgaaaaataaatatataacttgtatt 153  Q
    ||||||||||||| ||||||||||  | ||||||||  ||| | |||||||||||| |||||||||| || || ||||||||    
T  38219940 tcctcatttttactattgaaataataatttaattaacattagtttgattaaaacaatgaaaaataaacatgtagcttgtatt 38220021  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 7779935 - 7779856
Alignment:
Q  77 atttttacgattgaaataaagacttaattaatgttaatatgattaaaacaacgaaaaataaatatataacttgtattaaa 156  Q
    ||||||||||||||||||| ||||||| | || | ||| |||||||||| | | ||||||||||| || || ||||||||    
T  7779935 atttttacgattgaaataatgacttaactgatatcaatttgattaaaactatggaaaataaatatgtagctcgtattaaa 7779856  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 32285311 - 32285346
Alignment:
Q  121 aaaacaacgaaaaataaatatataacttgtattaaa 156  Q
    |||||||||||||||||||||||||||| |||||||    
T  32285311 aaaacaacgaaaaataaatatataacttatattaaa 32285346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 38228252 - 38228286
Alignment:
Q  119 ttaaaacaacgaaaaataaatatataacttgtatt 153  Q
    ||||||||||||||||||||||| |||||||||||    
T  38228252 ttaaaacaacgaaaaataaatatttaacttgtatt 38228286  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 8274291 - 8274249
Alignment:
Q  100 ttaattaatgttaatatgattaaaacaacgaaaaataaatata 142  Q
    |||||||||| | |||||||| |||||||||||||||||||||    
T  8274291 ttaattaatgctcatatgatttaaacaacgaaaaataaatata 8274249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 37273211 - 37273251
Alignment:
Q  116 tgattaaaacaacgaaaaataaatatataacttgtattaaa 156  Q
    ||||| ||||||||||||||||||||||||||  |||||||    
T  37273211 tgatttaaacaacgaaaaataaatatataactcttattaaa 37273251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 40702823 - 40702879
Alignment:
Q  77 atttttacgattgaaataaagacttaattaatgttaatatgattaaaacaacgaaaa 133  Q
    ||||||||||||||||||  ||||||||||| |||| | ||| ||||||||| ||||    
T  40702823 atttttacgattgaaatatcgacttaattaaagttagtttgaataaaacaactaaaa 40702879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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