View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_17 (Length: 524)

Name: NF16904_low_17
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_17
NF16904_low_17
[»] chr1 (5 HSPs)
chr1 (212-344)||(36573328-36573460)
chr1 (421-499)||(36573173-36573251)
chr1 (65-131)||(36573542-36573608)
chr1 (291-325)||(24565511-24565545)
chr1 (19-47)||(36573647-36573675)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 9e-62; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 212 - 344
Target Start/End: Complemental strand, 36573460 - 36573328
Alignment:
Q  212 aaaagagacgggatatattacgatgtcaaaagagacgagttatattacaatatccatcaagcaatgatcccataaccttgccgatttgatgaccggtttg 311  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36573460 aaaagagacgggttatattacgatgtcaaaagagacgggttatattataatatccatcaagcaatgatcccataaccttgccgatttgatgaccggtttg 36573361  T
Q  312 gtttttaaaacatttatatgtcatcttaagact 344  Q
    |||||||||||||||||||||||||||||||||    
T  36573360 gtttttaaaacatttatatgtcatcttaagact 36573328  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 421 - 499
Target Start/End: Complemental strand, 36573251 - 36573173
Alignment:
Q  421 cgtgtcacatcaatgggggctccacccgtagggacgtggtgtttcaaatggtcttcaaccctccatacaagtcaaaccg 499  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  36573251 cgtgtcacatcaatgggggctccacccgtagggacgttgtttttcaaatggtcttcaaccctccatacaagtcaaaccg 36573173  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 36573608 - 36573542
Alignment:
Q  65 cctatattttattcccacatggattataattaaattaaaacaataaacaatgatatattttaactac 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36573608 cctatattttattcccacatggattataattaaattaaaacaataaacaatgatatattttaactac 36573542  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 325
Target Start/End: Complemental strand, 24565545 - 24565511
Alignment:
Q  291 gccgatttgatgaccggtttggtttttaaaacatt 325  Q
    ||||||| |||||||||||||||||||||||||||    
T  24565545 gccgattcgatgaccggtttggtttttaaaacatt 24565511  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 36573675 - 36573647
Alignment:
Q  19 acatagtatgcccctttcaattttgcaat 47  Q
    |||||||||||||||||||||||||||||    
T  36573675 acatagtatgcccctttcaattttgcaat 36573647  T

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