View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_18 (Length: 522)

Name: NF16904_low_18
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_18
NF16904_low_18
[»] chr6 (9 HSPs)
chr6 (86-247)||(2996224-2996386)
chr6 (19-85)||(2996414-2996480)
chr6 (19-58)||(2980098-2980137)
chr6 (19-54)||(2983974-2984009)
chr6 (389-424)||(16193825-16193860)
chr6 (383-432)||(2996055-2996104)
chr6 (389-425)||(15057111-15057147)
chr6 (389-417)||(28606479-28606507)
chr6 (389-425)||(28606567-28606603)
[»] scaffold0011 (1 HSPs)
scaffold0011 (174-245)||(13415-13486)
[»] chr4 (9 HSPs)
chr4 (19-60)||(38885789-38885830)
chr4 (389-424)||(11392394-11392429)
chr4 (383-424)||(30023635-30023676)
chr4 (383-426)||(337030-337073)
chr4 (384-422)||(22435442-22435480)
chr4 (383-425)||(35297495-35297537)
chr4 (394-432)||(43063537-43063575)
chr4 (389-418)||(29821361-29821390)
chr4 (383-424)||(46321425-46321466)
[»] chr8 (4 HSPs)
chr8 (389-424)||(31470840-31470875)
chr8 (389-425)||(3647481-3647517)
chr8 (389-424)||(7931551-7931586)
chr8 (389-432)||(32857068-32857111)
[»] chr3 (6 HSPs)
chr3 (389-424)||(53299824-53299859)
chr3 (392-425)||(26960937-26960970)
chr3 (389-425)||(26960839-26960875)
chr3 (384-424)||(29081690-29081730)
chr3 (383-424)||(48342306-48342347)
chr3 (390-423)||(53299734-53299767)
[»] chr2 (6 HSPs)
chr2 (391-425)||(18182528-18182562)
chr2 (389-422)||(1355989-1356022)
chr2 (384-424)||(5095804-5095844)
chr2 (394-424)||(7755363-7755393)
chr2 (398-432)||(12918552-12918586)
chr2 (398-432)||(39819082-39819116)
[»] chr7 (5 HSPs)
chr7 (383-424)||(32315734-32315775)
chr7 (389-420)||(6980892-6980923)
chr7 (389-425)||(16648911-16648947)
chr7 (389-425)||(17623272-17623308)
chr7 (393-425)||(27385931-27385963)
[»] chr5 (5 HSPs)
chr5 (389-425)||(34394691-34394727)
chr5 (384-430)||(4376371-4376417)
chr5 (398-432)||(29385390-29385424)
chr5 (389-425)||(5998555-5998591)
chr5 (393-425)||(20986462-20986494)
[»] chr1 (6 HSPs)
chr1 (389-424)||(10449475-10449510)
chr1 (389-424)||(44291144-44291179)
chr1 (394-424)||(4579195-4579225)
chr1 (392-426)||(44382433-44382467)
chr1 (383-423)||(44801780-44801821)
chr1 (392-432)||(421227-421267)
[»] scaffold0343 (1 HSPs)
scaffold0343 (393-426)||(12307-12340)
[»] scaffold0312 (1 HSPs)
scaffold0312 (392-432)||(9304-9344)
[»] scaffold0031 (1 HSPs)
scaffold0031 (389-425)||(105402-105438)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 6e-63; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 2996386 - 2996224
Alignment:
Q  86 ggttggtggtggtagttttttggagttttcaagaaggcgtctctttatgaaatctttcatctccttttgccttggtggacctc-tgtgttcgtgactttt 184  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| || | ||||||||||||||||    
T  2996386 ggttggtggtggtagttttttagagttttcaagaaggcgtctctttatggaatctttcgtctccttttgcctttgtgggccccatgtgttcgtgactttt 2996287  T
Q  185 ggagaagtgtaatttgcttttgcttgccactatcttgtattgattgctccaatgtgctattgt 247  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2996286 ggagaagtgtgatttgcttttgcttgccactagcttgtattgattgctccaatgtgctattgt 2996224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 2996480 - 2996414
Alignment:
Q  19 taggctcataagcaaaaccatgcaactcaaacccatcataacaaaaatatagtgcagctgcgtgtat 85  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||| || | ||||  |||||||||    
T  2996480 taggctcataagcaagaccatgcaactcaaacccatcataaccaaagtagaatgcaagtgcgtgtat 2996414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 2980098 - 2980137
Alignment:
Q  19 taggctcataagcaaaaccatgcaactcaaacccatcata 58  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  2980098 taggttcataagcaaaaccatgcaactcaaacccatcata 2980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 2983974 - 2984009
Alignment:
Q  19 taggctcataagcaaaaccatgcaactcaaacccat 54  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2983974 taggctcataagcaaaatcatgcaactcaaacccat 2984009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 16193825 - 16193860
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcac 424  Q
    ||||||||||||||||||||||||| ||||||||||    
T  16193825 ttgtacacttgtgacattgtggttgaccaatgtcac 16193860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 2996104 - 2996055
Alignment:
Q  383 gttttattgtacacttgtgacattgtggttggccaatgtcacaaatgtca 432  Q
    ||||| |||||||||||||| |||| ||||  ||||||||||||||||||    
T  2996104 gttttgttgtacacttgtgatattggggttaaccaatgtcacaaatgtca 2996055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 15057111 - 15057147
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  15057111 ttgtacacttgtgatattttggttggccaatgtcaca 15057147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 417
Target Start/End: Complemental strand, 28606507 - 28606479
Alignment:
Q  389 ttgtacacttgtgacattgtggttggcca 417  Q
    |||||||||||||||||||||||||||||    
T  28606507 ttgtacacttgtgacattgtggttggcca 28606479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 28606567 - 28606603
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    ||||||||||  |||||||||||||||||||||||||    
T  28606567 ttgtacacttaagacattgtggttggccaatgtcaca 28606603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 13486 - 13415
Alignment:
Q  174 tcgtgacttttggagaagtgtaatttgcttttgcttgccactatcttgtattgattgctccaatgtgctatt 245  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| |||||| |||||    
T  13486 tcgtgacttttggagaagtgtgatttgtttttgcttgccactagcttgtgttgattgcttcaatgttctatt 13415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 38885789 - 38885830
Alignment:
Q  19 taggctcataagcaaaaccatgcaactcaaacccatcataac 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38885789 taggctcataagcaaaaccatgcaactcaaacccatcataac 38885830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 11392394 - 11392429
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcac 424  Q
    ||||||||||||||||||||||||||||||||||||    
T  11392394 ttgtacacttgtgacattgtggttggccaatgtcac 11392429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 30023635 - 30023676
Alignment:
Q  383 gttttattgtacacttgtgacattgtggttggccaatgtcac 424  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  30023635 gtttttttgtacacttgtgacattgtggttggtcaatgtcac 30023676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 426
Target Start/End: Original strand, 337030 - 337073
Alignment:
Q  383 gttttattgtacacttgtgacattgtggttggccaatgtcacaa 426  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||    
T  337030 gtttttttgtacacttttgacattgtggttggtcaatgtcacaa 337073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 22435442 - 22435480
Alignment:
Q  384 ttttattgtacacttgtgacattgtggttggccaatgtc 422  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  22435442 tttttttgtacacttgtgacattgtggttggtcaatgtc 22435480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 425
Target Start/End: Complemental strand, 35297537 - 35297495
Alignment:
Q  383 gttttattgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||    
T  35297537 gtttttttgtacacttgtgatattgtggttggtcaatgtcaca 35297495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 43063575 - 43063537
Alignment:
Q  394 cacttgtgacattgtggttggccaatgtcacaaatgtca 432  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  43063575 cacttgtgacattgtggttggctaatgtcaccaatgtca 43063537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 418
Target Start/End: Complemental strand, 29821390 - 29821361
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaa 418  Q
    ||||||||||||||||||||||||||||||    
T  29821390 ttgtacacttgtgacattgtggttggccaa 29821361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 46321425 - 46321466
Alignment:
Q  383 gttttattgtacacttgtgacattgtggttggccaatgtcac 424  Q
    ||||| ||||||| |||||||||||||||||| |||||||||    
T  46321425 gtttttttgtacagttgtgacattgtggttggtcaatgtcac 46321466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 31470840 - 31470875
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcac 424  Q
    ||||||||||||||||||||||||||||||||||||    
T  31470840 ttgtacacttgtgacattgtggttggccaatgtcac 31470875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 3647481 - 3647517
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    ||||||||||||| |||||||||||||||||||||||    
T  3647481 ttgtacacttgtgtcattgtggttggccaatgtcaca 3647517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 7931586 - 7931551
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcac 424  Q
    |||||||||||||||||||||||||| |||||||||    
T  7931586 ttgtacacttgtgacattgtggttggtcaatgtcac 7931551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Original strand, 32857068 - 32857111
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcacaaatgtca 432  Q
    |||||||||||||||||||||||||||| ||||||  |||||||    
T  32857068 ttgtacacttgtgacattgtggttggcctatgtcatcaatgtca 32857111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 53299824 - 53299859
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcac 424  Q
    ||||||||||||||||||||||||||||||||||||    
T  53299824 ttgtacacttgtgacattgtggttggccaatgtcac 53299859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 26960937 - 26960970
Alignment:
Q  392 tacacttgtgacattgtggttggccaatgtcaca 425  Q
    ||||||||||||||||||||||||||||||||||    
T  26960937 tacacttgtgacattgtggttggccaatgtcaca 26960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 26960875 - 26960839
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26960875 ttgtacacttgtgacattgtggttggctaatgtcaca 26960839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 29081690 - 29081730
Alignment:
Q  384 ttttattgtacacttgtgacattgtggttggccaatgtcac 424  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  29081690 tttttttgtacacttgtgacattgtggttgaccaatgtcac 29081730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 48342306 - 48342347
Alignment:
Q  383 gttttattgtacacttgtgacattgtggttggccaatgtcac 424  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||    
T  48342306 gtttttttgtacatttgtgacattgtggttggccaatatcac 48342347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 53299767 - 53299734
Alignment:
Q  390 tgtacacttgtgacattgtggttggccaatgtca 423  Q
    ||||||| ||||||||||||||||||||||||||    
T  53299767 tgtacacctgtgacattgtggttggccaatgtca 53299734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 18182562 - 18182528
Alignment:
Q  391 gtacacttgtgacattgtggttggccaatgtcaca 425  Q
    |||||||||||||||||||||||||||||||||||    
T  18182562 gtacacttgtgacattgtggttggccaatgtcaca 18182528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 1355989 - 1356022
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtc 422  Q
    ||||||||||||||||||||||||||||||||||    
T  1355989 ttgtacacttgtgacattgtggttggccaatgtc 1356022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 5095804 - 5095844
Alignment:
Q  384 ttttattgtacacttgtgacattgtggttggccaatgtcac 424  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  5095804 tttttttgtacatttgtgacattgtggttggccaatgtcac 5095844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 424
Target Start/End: Complemental strand, 7755393 - 7755363
Alignment:
Q  394 cacttgtgacattgtggttggccaatgtcac 424  Q
    |||||||||||||||||||||||||||||||    
T  7755393 cacttgtgacattgtggttggccaatgtcac 7755363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 432
Target Start/End: Complemental strand, 12918586 - 12918552
Alignment:
Q  398 tgtgacattgtggttggccaatgtcacaaatgtca 432  Q
    ||||||||||||||||||||||||||| |||||||    
T  12918586 tgtgacattgtggttggccaatgtcaccaatgtca 12918552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 432
Target Start/End: Complemental strand, 39819116 - 39819082
Alignment:
Q  398 tgtgacattgtggttggccaatgtcacaaatgtca 432  Q
    ||||||||||||||||||||||||||| |||||||    
T  39819116 tgtgacattgtggttggccaatgtcaccaatgtca 39819082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 32315775 - 32315734
Alignment:
Q  383 gttttattgtacacttgtgacattgtggttggccaatgtcac 424  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  32315775 gtttttttgtacaattgtgacattgtggttggccaatgtcac 32315734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 420
Target Start/End: Complemental strand, 6980923 - 6980892
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatg 420  Q
    ||||||||||||||||||||||||||||||||    
T  6980923 ttgtacacttgtgacattgtggttggccaatg 6980892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 16648911 - 16648947
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  16648911 ttgtacacttgtgaaattgtggtttgccaatgtcaca 16648947  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 17623272 - 17623308
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  17623272 ttgtacacttgtgatattgtggtttgccaatgtcaca 17623308  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Original strand, 27385931 - 27385963
Alignment:
Q  393 acacttgtgacattgtggttggccaatgtcaca 425  Q
    |||||||||||||||||||||||||| ||||||    
T  27385931 acacttgtgacattgtggttggccaacgtcaca 27385963  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 34394727 - 34394691
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34394727 ttgtacacttgtgacattgtggttgaccaatgtcaca 34394691  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 4376417 - 4376371
Alignment:
Q  384 ttttattgtacacttgtgacattgtggttggccaatgtcacaaatgt 430  Q
    |||| ||||||||||||||||||||||||| |||||| ||| |||||    
T  4376417 tttttttgtacacttgtgacattgtggttgaccaatggcacgaatgt 4376371  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 432
Target Start/End: Original strand, 29385390 - 29385424
Alignment:
Q  398 tgtgacattgtggttggccaatgtcacaaatgtca 432  Q
    ||||||||||||||||||||||||||| |||||||    
T  29385390 tgtgacattgtggttggccaatgtcaccaatgtca 29385424  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 5998591 - 5998555
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    |||||||||| |||||||||||||| |||||||||||    
T  5998591 ttgtacacttctgacattgtggttgaccaatgtcaca 5998555  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 20986494 - 20986462
Alignment:
Q  393 acacttgtgacattgtggttggccaatgtcaca 425  Q
    ||||||||||||||||||||| |||||||||||    
T  20986494 acacttgtgacattgtggttgaccaatgtcaca 20986462  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 10449510 - 10449475
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcac 424  Q
    |||||||||||||||||||||||||| |||||||||    
T  10449510 ttgtacacttgtgacattgtggttggtcaatgtcac 10449475  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 44291144 - 44291179
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcac 424  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44291144 ttgtacacttgtgacattgtggttgaccaatgtcac 44291179  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 424
Target Start/End: Complemental strand, 4579225 - 4579195
Alignment:
Q  394 cacttgtgacattgtggttggccaatgtcac 424  Q
    |||||||||||||||||||||||||||||||    
T  4579225 cacttgtgacattgtggttggccaatgtcac 4579195  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 426
Target Start/End: Original strand, 44382433 - 44382467
Alignment:
Q  392 tacacttgtgacattgtggttggccaatgtcacaa 426  Q
    ||||||||||| |||||||||||||||||||||||    
T  44382433 tacacttgtgatattgtggttggccaatgtcacaa 44382467  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 44801821 - 44801780
Alignment:
Q  383 gttttattgtacactt-gtgacattgtggttggccaatgtca 423  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  44801821 gtttttttgtacactttgtgacattgtggttggccaatgtca 44801780  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 421227 - 421267
Alignment:
Q  392 tacacttgtgacattgtggttggccaatgtcacaaatgtca 432  Q
    ||||||| ||||||||||||||||||||||| | |||||||    
T  421227 tacacttatgacattgtggttggccaatgtcgccaatgtca 421267  T

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Target: scaffold0343 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 426
Target Start/End: Original strand, 12307 - 12340
Alignment:
Q  393 acacttgtgacattgtggttggccaatgtcacaa 426  Q
    |||||||||||||||||||||| |||||||||||    
T  12307 acacttgtgacattgtggttggtcaatgtcacaa 12340  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 9344 - 9304
Alignment:
Q  392 tacacttgtgacattgtggttggccaatgtcacaaatgtca 432  Q
    ||||||| ||||||||||||||||||||||| | |||||||    
T  9344 tacacttatgacattgtggttggccaatgtcgccaatgtca 9304  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 105438 - 105402
Alignment:
Q  389 ttgtacacttgtgacattgtggttggccaatgtcaca 425  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  105438 ttgtacacttgtgacattgtgattggtcaatgtcaca 105402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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