View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_2 (Length: 764)
Name: NF16904_low_2
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_2 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 43 - 745
Target Start/End: Complemental strand, 32313896 - 32313196
Alignment:
| Q |
43 |
aatcagcagatatttctagttcataaaaaatgaatatctttccagttctttaagatgtggtttgacaataaagatctattaaaacatatatatctcttgt |
142 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32313896 |
aatcagcagatatttctagttcataaaaaaagaatatctttccagttctttaagatgtggtttgacaataaagatctattaaaacacatatatctcttgt |
32313797 |
T |
|
| Q |
143 |
gatctaaacctcggattttagtttatagatatttgatggataaaatatgttaaaaggtccaacaatcctataactcaatcggaaaaatgttgaaattctt |
242 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32313796 |
gatctaaacctcggattttagtctatagatatttgatggataaaatatgttaaaaggtccaacaatcctataactcaatcgaaaaaatgttgaaattctt |
32313697 |
T |
|
| Q |
243 |
aagttggacgtcatgattgtggttcgaaccccaattccttatgtgtaagtttttaatgattgttgtcattttgtctaccnnnnnnntatatgtatgtaga |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |
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| T |
32313696 |
aagttggacgtcatgattgtggttcgaaccccaattccttatgtgtaagtttttaatgattgctgtcattttatctaccaaaaaaatatatgtatgtaga |
32313597 |
T |
|
| Q |
343 |
ttcgatatttctacaaggcaactgtagtctaaccgttaaaattttaaaagagaatgtcttttaatgannnnnnngaattgtagtatcttatgccttatgc |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32313596 |
ttcgatatttctacaaggcaactgtagtctaaccgttaaaattttaaaagagaatgtcttttaatgatttttttgaattgtagtatcttatgccttatgc |
32313497 |
T |
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| Q |
443 |
tccaatgactgaaccaaagaaactagtttatcaccgagttaactggattgatttgatgcatttatggattagagttgaataatcgtagctcaaactagtt |
542 |
Q |
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| T |
32313496 |
tccaatgactgaaccaaagaaactagtttatcaccgagttaactggattgatttgatgcatttatggattagagttgaataatcgtagctcaaactagtt |
32313397 |
T |
|
| Q |
543 |
gacttcaaaggtatcatcaactccaaatatacccttcaacgttaaattgggcaagaagaatagaacacagggaaaaaaggtttatagtagtcactaaaat |
642 |
Q |
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| T |
32313396 |
gacttcaaaggtatcatcaactcctaatatacccttcaacgttaaattgggcaagaagaatagaacacagggaaaaaaggtttatagtagtcactaaaat |
32313297 |
T |
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| Q |
643 |
aaataaccaaaatggaatgaaaaggcttgcattgttacatacaatttaaattttaaattttaagttaaagcaattcatatactttatattaaaaagtgca |
742 |
Q |
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| T |
32313296 |
aaataaccaaaatgaaattaaaaggcttgcattgttacatacaatttaaattttaaattttaagttaaagcaatt--tatactttatattaaaaagtgca |
32313199 |
T |
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| Q |
743 |
taa |
745 |
Q |
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| T |
32313198 |
taa |
32313196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 518 - 701
Target Start/End: Original strand, 39364813 - 39365000
Alignment:
| Q |
518 |
tgaataatcgtagctcaaactagttgacttcaaaggtatcatcaactccaaatatacccttcaacgttaaattgggcaagaagaatagaacacagggaaa |
617 |
Q |
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| T |
39364813 |
tgaataatccttcctcaaactagttgacttcaaaggtatcatcaactcc-aatatacacttcaaggttaaattggggaagaagaatagaactca-agaaa |
39364910 |
T |
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| Q |
618 |
aaaggtt------tatagtagtcactaaaataaataaccaaaatggaatgaaaaggcttgcattgttacatacaatttaaattttaaatt |
701 |
Q |
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| T |
39364911 |
aaaggtttatatatatagtagtcactaaaataaataactaaaatggaatgaaaaagcttgcatcgttacatacaatttaagttttaaatt |
39365000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 32566481 - 32566357
Alignment:
| Q |
357 |
aaggcaactgtagtctaaccgttaaaattttaaaagagaatgtcttttaatgannnnnnngaattgta---gtatcttatgccttatgctccaatgactg |
453 |
Q |
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| T |
32566481 |
aaggcaaccttagtctaatcgttgagattttaaaagagaatgtcttttaattatttttttgaattgtaagagtatcttatgccgtatgctccattgaccg |
32566382 |
T |
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| Q |
454 |
aaccaaagaaactagtttatcaccg |
478 |
Q |
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| T |
32566381 |
aaccaaagaaactagcttatcaccg |
32566357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 32566718 - 32566656
Alignment:
| Q |
128 |
atatatatctcttgtgatctaaacctcggattttagtttatagatatttgatggataaaatat |
190 |
Q |
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| T |
32566718 |
atatatatatattatgatctaaaccccagatcttagtctgtagatatttgatggataaaatat |
32566656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 19418 - 19369
Alignment:
| Q |
225 |
aaaaatgttgaaattcttaagttggacgtcatgattgtggttcgaacccc |
274 |
Q |
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| T |
19418 |
aaaaatgttgaaattgttaggccggacgtcatgattggggttcgaacccc |
19369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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