View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_20 (Length: 501)
Name: NF16904_low_20
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 16230927 - 16231424
Alignment:
| Q |
1 |
gttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctaaaaaggaattcgttgagccaaaagacgatctagagaagcaaattgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
16230927 |
gttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctaaaaaggaattcgttgagccaaaagacgatcaagagaagcaaatcgaat |
16231026 |
T |
|
| Q |
101 |
cctcaaataccaccgttaagtgaaataaacaatcatgaggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggcttatgta |
200 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16231027 |
cctcaaataccacagttaagtgaaatgaacaatcatgtggaggttgatacatttggacagattttcacgactgaaacagttccctctaaaggcttatgta |
16231126 |
T |
|
| Q |
201 |
agttcaatcattttgaatataaagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattccatatataga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16231127 |
agttcaatcattttgaatataaagtctcacatgaatttcaatcaacagtaaagaatttaaattaaagattgttaatagcactagtcattccatatataga |
16231226 |
T |
|
| Q |
301 |
aaaataattaatgttcaatcattttgactacgaagtctcaagtaacagaagacattacatttttgcgatgaagaagcccatcatcaccaataactagacc |
400 |
Q |
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|
|||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16231227 |
aaaataatgaacgttcaatcattttgattacgaagtctcaagtaacagaagacattacatttttgcgatgaagaagcccatcatcgccaataactagacc |
16231326 |
T |
|
| Q |
401 |
tgatacattcttggatggcgtttcagcggaaactgtttcaaacagtccttcttttcttttctttgatgaagtttcagcatcatctttcttctcagtcg |
498 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16231327 |
tgatacattcttggatggcgtttcagcagaaactgtttcaaacggtccttcttttcttttctttgatgaagtttcagcatcatctttctgatcagtcg |
16231424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 34688689 - 34688961
Alignment:
| Q |
2 |
ttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctaaaaaggaattcgttgagccaaaagacgatctagagaagcaaattgaatc |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| | |||||||||||||| |||| |||||||||||| || || |
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|
| T |
34688689 |
ttgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaagatgatcaagagaagcaaatcgagtc |
34688788 |
T |
|
| Q |
102 |
ctcaaataccaccgttaagtgaaataaacaatcatgaggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggcttatgtaa |
201 |
Q |
| |
|
|||||||||||| || ||||| || |||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||| || |
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| T |
34688789 |
ctcaaataccacaatt-agtgagatgaacaataatgtggaggttgatacatttggacagactttcaggattgaaacagttccctgta------------- |
34688874 |
T |
|
| Q |
202 |
gttcaatcattttgaatataaagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattcca |
292 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34688875 |
----aatcattttgaatataaagactcacatgaatttcagtcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattcca |
34688961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 34711101 - 34711373
Alignment:
| Q |
2 |
ttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctaaaaaggaattcgttgagccaaaagacgatctagagaagcaaattgaatc |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| | |||||||||||||| |||| |||||||||||| || || |
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|
| T |
34711101 |
ttgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaagatgatcaagagaagcaaatcgagtc |
34711200 |
T |
|
| Q |
102 |
ctcaaataccaccgttaagtgaaataaacaatcatgaggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggcttatgtaa |
201 |
Q |
| |
|
|||||||||||| || ||||| || |||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||| || |
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|
| T |
34711201 |
ctcaaataccacaatt-agtgagatgaacaataatgtggaggttgatacatttggacagactttcaggattgaaacagttccctgta------------- |
34711286 |
T |
|
| Q |
202 |
gttcaatcattttgaatataaagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattcca |
292 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
34711287 |
----aatcattttgaatataaagactcacatgaatttcagtcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattcca |
34711373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 35546785 - 35546645
Alignment:
| Q |
55 |
aaggaattcgttgagccaaaagacgatctagagaagcaaattgaatcctcaaataccaccgttaagtgaaataaacaatcatgaggaggttgatacattt |
154 |
Q |
| |
|
|||||||| |||||||| ||||| |||| ||||||| |||| || |||| |||||| || |||| ||| |||||||| ||| || |||||||| |||| |
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| T |
35546785 |
aaggaatttgttgagcccaaagatgatcaagagaagaaaatcgagtccttaaatacgacaattaa-tgagataaacaacaatgtggcggttgatagattt |
35546687 |
T |
|
| Q |
155 |
ggacagattttcaggactgaaacagttccctctaaaggctta |
196 |
Q |
| |
|
||||||| |||| |||| ||||| || |||||||||||||| |
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|
| T |
35546686 |
ggacagactttctagactaaaacatttgcctctaaaggctta |
35546645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 35925343 - 35925285
Alignment:
| Q |
222 |
aagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagca |
280 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||| ||| |||||||||||||||||| |
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|
| T |
35925343 |
aagtctcacaagaatttcagtcaatagtaaagaattcaaaataaagattgttaatagca |
35925285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 35564801 - 35564752
Alignment:
| Q |
41 |
ggataaatgctaaaaaggaattcgttgagccaaaagacgatctagagaag |
90 |
Q |
| |
|
||||||||||||| ||| |||| |||||||||||||| |||| ||||||| |
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|
| T |
35564801 |
ggataaatgctaagaagcaatttgttgagccaaaagatgatcaagagaag |
35564752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 34689781 - 34689833
Alignment:
| Q |
234 |
aatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtc |
286 |
Q |
| |
|
||||||| |||| |||||| | | |||||| |||||||||||||||||||||| |
|
|
| T |
34689781 |
aatttcagtcaatagtaaaaagtctaaagttaagattgttaatagcactagtc |
34689833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 34712193 - 34712245
Alignment:
| Q |
234 |
aatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtc |
286 |
Q |
| |
|
||||||| |||| |||||| | | |||||| |||||||||||||||||||||| |
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|
| T |
34712193 |
aatttcagtcaatagtaaaaagtctaaagttaagattgttaatagcactagtc |
34712245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 4384080 - 4384237
Alignment:
| Q |
38 |
aggggataaatgctaaaaaggaattcgttgagccaaaagacgatctagagaagcaaattgaatcctcaaataccaccgttaagtgaaataaacaatcatg |
137 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| || || |||||| |||| | ||| ||| |||||||| ||| |
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|
| T |
4384080 |
aggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaacagagtcttcaaatgccacagctaa-tgagataaacaacaatg |
4384178 |
T |
|
| Q |
138 |
aggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggctta |
196 |
Q |
| |
|
| |||| ||| ||||||||||| || ||||||||||||| |||| |||||||||||| |
|
|
| T |
4384179 |
tgtcggttaatatatttggacagacttccaggactgaaacatttccgtctaaaggctta |
4384237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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