View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_21 (Length: 495)

Name: NF16904_low_21
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_21
NF16904_low_21
[»] scaffold0155 (1 HSPs)
scaffold0155 (9-167)||(797-966)
[»] chr8 (6 HSPs)
chr8 (355-477)||(11676627-11676749)
chr8 (353-464)||(11659726-11659837)
chr8 (353-464)||(11668895-11669006)
chr8 (209-333)||(11659334-11659454)
chr8 (209-249)||(11668503-11668543)
chr8 (209-249)||(31372259-31372299)
[»] chr4 (3 HSPs)
chr4 (9-105)||(42390538-42390630)
chr4 (209-249)||(53239133-53239173)
chr4 (133-170)||(42390668-42390705)
[»] chr1 (2 HSPs)
chr1 (209-337)||(2170142-2170265)
chr1 (209-332)||(28851126-28851245)
[»] chr7 (3 HSPs)
chr7 (209-337)||(32248959-32249083)
chr7 (209-333)||(33426463-33426583)
chr7 (209-305)||(47815556-47815650)
[»] chr6 (1 HSPs)
chr6 (209-333)||(10460846-10460966)


Alignment Details
Target: scaffold0155 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 797 - 966
Alignment:
Q  9 taaggagcggccaacaatggaatggaaataaacaaaaagaaaacagtatatggatattttgcatgaagggtgtggacgagaatgaaggaaaatgtgttac 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  797 taaggagcggccatcaatggaatggaaataaacaaaaagaaaacagtatatggatattttgcatgaagggtgtggacgagaatgaaggaaaatgtgttac 896  T
Q  109 aa-----------tcacttggatacacacatgcaagaatacaaaaatacatgtgtttatatcttctatta 167  Q
    ||           ||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  897 aattactttgacgtcagttggatacacgcatgcaagaatacaaaaatacatgtgtttatttcttctatta 966  T

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Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 355 - 477
Target Start/End: Original strand, 11676627 - 11676749
Alignment:
Q  355 cataaattaatgtttttcattgtaatttatttaataatttcatcagcctcgtcttgatctatgtgtttctattcttgtaatacaatgatttgtgttcttg 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11676627 cataaattaatgtttttcattgtaatttatttaataatttcatcagcctcgtcttgatctatgtgtttttattcttgtaatacaatgatttgtgttcttg 11676726  T
Q  455 tgttgctttccttgtagacattg 477  Q
    |||||||||||| ||||||||||    
T  11676727 tgttgctttcctcgtagacattg 11676749  T

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Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 353 - 464
Target Start/End: Original strand, 11659726 - 11659837
Alignment:
Q  353 ctcataaattaatgtttttcattgtaatttatttaataatttcatcagcctcgtcttgatctatgtgtttctattcttgtaatacaatgatttgtgttct 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11659726 ctcataaattaatgtttttcattgtaatttatttaataatttcatcagcctcgtcttgatctatgtgtttctattcttataatacaatgatttgtgttct 11659825  T
Q  453 tgtgttgctttc 464  Q
    ||||||||||||    
T  11659826 tgtgttgctttc 11659837  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 353 - 464
Target Start/End: Original strand, 11668895 - 11669006
Alignment:
Q  353 ctcataaattaatgtttttcattgtaatttatttaataatttcatcagcctcgtcttgatctatgtgtttctattcttgtaatacaatgatttgtgttct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  11668895 ctcataaattaatgtttttcattgtaatttatttaataatttcatcaacctcgtcttgatctatgtgtttatattcttataatacaatgatttgtgttct 11668994  T
Q  453 tgtgttgctttc 464  Q
    ||||||||||||    
T  11668995 tgtgttgctttc 11669006  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 209 - 333
Target Start/End: Original strand, 11659334 - 11659454
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatagnnnnnnnngacagtatggaacaaataagtttgactgaatcatggaattagtaccactaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||        ||||| ||||||||| ||||| |||||| || || ||||||| |||||       
T  11659334 tatttgtatgtaccaatactccaaattaaaatggtcaatag--atttttgacagcatggaacaagtaagtatgactggattatagaattagcaccac--c 11659429  T
Q  309 aaacttgtgagttttgcactttggg 333  Q
    |||||||||||||||||| ||||||    
T  11659430 aaacttgtgagttttgcattttggg 11659454  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 11668503 - 11668543
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatag 249  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  11668503 tatttgtatgtaccaatactccaaattaaaatggccaatag 11668543  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 31372299 - 31372259
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatag 249  Q
    |||||||||||||||||||| |||| |||||||| ||||||    
T  31372299 tatttgtatgtaccaatacttcaaactaaaatggccaatag 31372259  T

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Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 42390538 - 42390630
Alignment:
Q  9 taaggagcggccaacaatggaatggaaataaacaaaaagaaaacagtatatggatattttgcatgaagggtgtggacgagaatgaaggaaaatgtgt 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  42390538 taaggagcggccaacaatggaatggaaataaacaaaaggaaaacag--tatggatattttgcatgaagg--gtggacgagaatgaaggaaaatgtgt 42390630  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 53239133 - 53239173
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatag 249  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  53239133 tatttgtatgtaccaatactccaaactaaaatggtcaatag 53239173  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 42390668 - 42390705
Alignment:
Q  133 gaatacaaaaatacatgtgtttatatcttctattaatt 170  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42390668 gaatacaaaaatacatgtgtttatattttctattaatt 42390705  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 209 - 337
Target Start/End: Original strand, 2170142 - 2170265
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatagnnnnnnnngacagtatggaacaaataagtttgactgaatcatggaattagtaccactaa 308  Q
    |||||||||||||||||||||| || |||||||||||||||        ||||| ||| ||||| ||||||||||||||| || ||||||| ||||| ||    
T  2170142 tatttgtatgtaccaatactcctaactaaaatggtcaatagttttt---gacagcatgcaacaagtaagtttgactgaattatagaattagcaccaccaa 2170238  T
Q  309 aaacttgtgagttttgcactttgggactt 337  Q
    |  ||||||||||||||||||||| ||||    
T  2170239 a--cttgtgagttttgcactttggaactt 2170265  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 332
Target Start/End: Original strand, 28851126 - 28851245
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatagnnnnnnnngacagtatggaacaaataagtttgactgaatcatggaattagtaccactaa 308  Q
    ||||||||||||||||||||| | | |||||||| ||||||        ||||| ||||||||| |||||||||||| || || ||||||| |||||       
T  28851126 tatttgtatgtaccaatactctagactaaaatggccaatagtttttt--gacagcatggaacaagtaagtttgactggattatagaattagcaccac--c 28851221  T
Q  309 aaacttgtgagttttgcactttgg 332  Q
    ||||||||||||||||||||||||    
T  28851222 aaacttgtgagttttgcactttgg 28851245  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 32249083 - 32248959
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatagnnnnnnnngacagtatggaacaaataagtttgactgaatcatggaattagtaccactaa 308  Q
    |||||||||||||||||||||||||||||||||  ||||||        || || ||||||||| |||||||||||| || || ||||||| ||||| ||    
T  32249083 tatttgtatgtaccaatactccaaattaaaatgaccaatagtttttt--gatagcatggaacaagtaagtttgactggattatagaattagcaccaccaa 32248986  T
Q  309 aaacttgtgagttttgcactttgggactt 337  Q
    |  ||||||| ||||||||||||||||||    
T  32248985 a--cttgtgaattttgcactttgggactt 32248959  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 333
Target Start/End: Original strand, 33426463 - 33426583
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatagnnnnnnnngacagtatggaacaaataagtttgactgaatcatggaattagtaccactaa 308  Q
    |||||||||||| |||||||||||| |||||||||||||||        ||||| ||||||||| ||||||||| || || || ||||||| |||||       
T  33426463 tatttgtatgtatcaatactccaaactaaaatggtcaatag--ttttttgacagcatggaacaagtaagtttgattggattatagaattagcaccac--c 33426558  T
Q  309 aaacttgtgagttttgcactttggg 333  Q
    ||||||||||||||| |||||||||    
T  33426559 aaacttgtgagttttacactttggg 33426583  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 47815650 - 47815556
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatagnnnnnnnngacagtatggaacaaataagtttgactgaatcatggaattagtaccac 305  Q
    |||||||||||| |||||||||||| |||||||| ||||||        ||||  ||||||||||||||||||||||||| || ||||||| |||||    
T  47815650 tatttgtatgtaacaatactccaaactaaaatggccaatagtttttt--gacaacatggaacaaataagtttgactgaattatagaattagcaccac 47815556  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 333
Target Start/End: Original strand, 10460846 - 10460966
Alignment:
Q  209 tatttgtatgtaccaatactccaaattaaaatggtcaatagnnnnnnnngacagtatggaacaaataagtttgactgaatcatggaattagtaccactaa 308  Q
    |||||||||||| ||||| |||||| |||||||| ||||||        ||||| ||||||||| |||||||||||| || || ||||||| |||||       
T  10460846 tatttgtatgtatcaatattccaaactaaaatggccaatagtttttt--gacagcatggaacaagtaagtttgactggattatagaattagcaccac--c 10460941  T
Q  309 aaacttgtgagttttgcactttggg 333  Q
    |||||||||| ||||||||||||||    
T  10460942 aaacttgtgaattttgcactttggg 10460966  T

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