View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_22 (Length: 494)
Name: NF16904_low_22
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 45981171 - 45980706
Alignment:
| Q |
19 |
ttcccaaatgatcacattgcaatgttacataacattttttatgaaaacaatgttacaaaacatggatcctccaatatttcagacttggagttatccacaa |
118 |
Q |
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| T |
45981171 |
ttcccaaatgatcacattgcaatgttacataacattttttatgaaaacaatgttacaaaacatagatcctccaatatttcagacttggagttatccacaa |
45981072 |
T |
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| Q |
119 |
aggagcttgaggtcaggagcttattaatatatatgttcagacgctcgggaaccccataagatgcggacatgaatcctctatagccatatggtgttacagc |
218 |
Q |
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| T |
45981071 |
aggagcttgaggtcaggagcttattaatatatatgttcagacgcttcggaaccccataagatgcggacatgaatcctctatagccatatgttgttacagc |
45980972 |
T |
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| Q |
219 |
cgtagcaactgttaaatttagagaaagaaaaaactagggatttctctctataaatctaatggtctctacaaccacagtcgtaaattatagaggatccaag |
318 |
Q |
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| T |
45980971 |
cgtaggaactgttaaatttagagaaagaaaaaactagggatttctctctataaatctaatggtctctacaaccgcagtcgtaaattatagaggatccaag |
45980872 |
T |
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| Q |
319 |
acagcacctatttgagcctttaaattacaatatacagttgcaaacagccaaggttctgtcattcagatgatatacgactaccaatgtttccttattagtt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45980871 |
acagcacctatttgagcctttaaattacaatatacagttgcaaacagccaaggttctgtcattcagatgatatacgactaccaatgtttccttattagtt |
45980772 |
T |
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| Q |
419 |
caacaaatttcagcaacaagaaaaccaattatgggttgtgagtatcacccatttttatcatctctg |
484 |
Q |
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| T |
45980771 |
caacaaatttcagcaacaagaaaaccaattatgggttgtgagtatcacccatttttatcatctctg |
45980706 |
T |
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