View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_25 (Length: 478)
Name: NF16904_low_25
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 44002004 - 44001730
Alignment:
| Q |
8 |
tcgaagaaaatcacacacttattgagtatcgtaaaagcacaaactcttttcaatgtgcttcctaagttagttcctataaatactctcatttaccaccatt |
107 |
Q |
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| T |
44002004 |
tcgaataaaatcacacacttattgagtatcgtaaaagcacaacctcttttcaatgtgcttcctaagttagttcctataaatactctcatttaccaccatt |
44001905 |
T |
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| Q |
108 |
tcatttcaaaataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaatacaaccatcagatcgaattcagtttcgattcgatc |
207 |
Q |
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| T |
44001904 |
tcatttcaaaataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaatacaaccatcagatcgaattcagattcgattcgatc |
44001805 |
T |
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| Q |
208 |
tggtggtttgggcggtctaaataactcttaattaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
286 |
Q |
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| T |
44001804 |
tggtggtttgggcggtctaaataactc----ttaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
44001730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 333 - 461
Target Start/End: Complemental strand, 44001682 - 44001557
Alignment:
| Q |
333 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatcatcaagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
432 |
Q |
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| T |
44001682 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatca---agatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
44001586 |
T |
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| Q |
433 |
cacaaagagttcatgttgtctatgctatg |
461 |
Q |
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| T |
44001585 |
cacaaagagttcatgttgtctatgctatg |
44001557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 461
Target Start/End: Original strand, 39865935 - 39866010
Alignment:
| Q |
386 |
atggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatg |
461 |
Q |
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| T |
39865935 |
atggagaaggtgatgaggttggctacagaaaagggtgtggtggtattcaccaagagctcttgttgtctatgctatg |
39866010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 461
Target Start/End: Original strand, 39861478 - 39861556
Alignment:
| Q |
383 |
aagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatg |
461 |
Q |
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| T |
39861478 |
aagatggagaaggtgatgaggttggctacagaaaagggtgttgtgattttcaccaagagctcttgttgtttgtgctatg |
39861556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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