View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_27 (Length: 464)
Name: NF16904_low_27
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 54151928 - 54152197
Alignment:
| Q |
1 |
tttcttgcatcttttcacttcattacaatagtaccgaccttatcaaaccatttgaattgcttgtcaatcaatctttgaacattaatcatcttcaggatta |
100 |
Q |
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| T |
54151928 |
tttcttgcatcttttcacttcattacaatagtaccgaccttatcaaaccatttgaattgcttgtcaatcaa-------acattaatcatcttcaggatta |
54152020 |
T |
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| Q |
101 |
atgtatattctagtgaaaaacttatgcaaataatattgaacttgtgcaattaatacttaaaatttacatcttcaagtttccttgtttgttatctataggc |
200 |
Q |
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| T |
54152021 |
atgtatattctagtgacaaatttatgcaaataatattgaacttgtgcaatta-tacttaaaatttacatcttcaagtttccttgtttgttatctataggc |
54152119 |
T |
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| Q |
201 |
taccactagtgatgaatcatattacaataatgt---tgatgatgattattaacggctttgaatttagttgtgcattat |
275 |
Q |
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| T |
54152120 |
taccactagtgatgaatcatactacaataatgttgatgatgatgatgattaaccgctttgaatttagttgtgcattat |
54152197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 277 - 420
Target Start/End: Original strand, 54153175 - 54153318
Alignment:
| Q |
277 |
tattttactcaggattcagaacttttctataggtagtttggtgtcatgttatgccatttgatagaactgttttatcttccattagcttccaagcactgat |
376 |
Q |
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| T |
54153175 |
tattttactcaggattcagaacttctctataggtagtttggtgtcatgttatgccatttgatagaactgttttatcttccattagcttccaagcattgat |
54153274 |
T |
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| Q |
377 |
aaaacctaggtagaacatttgtatgatactcgccctgatctcaa |
420 |
Q |
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| T |
54153275 |
aaaacctaagtagaacatttgtatgatactcgccctgatctcaa |
54153318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 162 - 396
Target Start/End: Original strand, 54127753 - 54127985
Alignment:
| Q |
162 |
atttacatcttcaagtttccttgtttgttatctataggctaccactagtgatgaatcatattacaataatgttgatgatgattattaacggctttgaatt |
261 |
Q |
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| T |
54127753 |
atttacatcttcaagtttccctgtttgttatctataggctaccgttagtgatgaatcgtattacaata---gtaatggtgatgattaacagctttgaata |
54127849 |
T |
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| Q |
262 |
tagttgtgcat-tatgtattttactcaggattcagaacttttctataggtagtttggtgtcatgttatgccatttgatagaactgttttatcttccatta |
360 |
Q |
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| T |
54127850 |
tagttgtgaatgcatgtagtttactcctgttttagaactgttttataggtagtttggtgtcattttatgccatttgatagaactgctttgtcttcaatca |
54127949 |
T |
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| Q |
361 |
gcttccaagcactgataaaacctaggtagaacattt |
396 |
Q |
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| T |
54127950 |
gcttccaagcattgataaaacctaagtagaacattt |
54127985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 54140708 - 54141078
Alignment:
| Q |
9 |
atcttttcacttcattacaatagta--ccgaccttatcaaaccatttgaattgcttgtcaatcaatctttgaacattaatcatcttcaggattaatgtat |
106 |
Q |
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| T |
54140708 |
atcttttcactttattacaatagtatacaggccttatcaaaccatttgaattgtttgtcaa----tctttgaacattaatgatcttcaagattaatgtat |
54140803 |
T |
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| Q |
107 |
attctagtgaaaaacttatgcaaataatattgaactt-gtgcaattaatact---------------taaaatttacatcttcaagtttccttgtttgtt |
190 |
Q |
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| T |
54140804 |
attttagtaagaaatttatgcaaataacattgaacttagtacattttacacttctggcagttataactaagatttacatcttcaagtttccttgtttgtt |
54140903 |
T |
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| Q |
191 |
atctataggctaccactagtgatgaatcatattacaataatgttgatgatgattattaacggctttgaatttagttgtgcatt-atgtattttactcagg |
289 |
Q |
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| T |
54140904 |
atctataggctacggtcattcatggatcatatgacagta---gtgatgatgatgattaacagctctgaatttagttgtgcattcatgtatttcactcatg |
54141000 |
T |
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| Q |
290 |
attcagaacttttctataggtagtttggtgtcatgttatgccatttgatagaactgttttatcttccattagcttcca |
367 |
Q |
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| T |
54141001 |
ttttcgaactgttttttaggtagtttggtgtcatgttatgccatttaatagaattgctttgccttccattagcttcca |
54141078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 54127559 - 54127711
Alignment:
| Q |
1 |
tttcttgcatcttttcacttcattacaatagta--ccgaccttatcaaaccatttgaattgcttgtcaatc----aatct----ttgaacattaatcatc |
90 |
Q |
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| T |
54127559 |
tttcttacatcttgtcactttattacaattgtagacagtccttatgaaaccatttgaattgtttgtcaatctttgaatttgaatttgaatatgaatcatc |
54127658 |
T |
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| Q |
91 |
ttcaggattaatgtatattctagtgaaaaacttatgcaaataatattgaactt |
143 |
Q |
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| T |
54127659 |
ttcaagattaatgtatatgttagtaagaaacttatgcaaataatattgaactt |
54127711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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