View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_3 (Length: 762)
Name: NF16904_low_3
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 12164407 - 12164180
Alignment:
| Q |
7 |
gtgagatgaaatttgtgaaagaagacaaaagaatatatttagggtaattttatttataatataaagcttgacttttcatatcagtcacctctaatctagg |
106 |
Q |
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| T |
12164407 |
gtgagatgaaatttatgaaagaagacaaaagaatatatttagggtaattttatttataatataaagcttgacttttcatatcagtcacctctaatctagg |
12164308 |
T |
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| Q |
107 |
gatgtgtgacatatgagaggtgaaatgcatgctttgattcctcagctttctgttttcttattactattattatccaccgacttgtttgtgttcaatgatt |
206 |
Q |
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| T |
12164307 |
gatgtgtgacatatgagaggtgaaatgcatgctttggttcctcagctttctgttttcttattactattattatccaccgacttgtttgtgttcattgatt |
12164208 |
T |
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| Q |
207 |
ttaatttgaatgaatgaaattattatta |
234 |
Q |
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| T |
12164207 |
ttaatttgaatgaatgaaattattatta |
12164180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 525 - 746
Target Start/End: Complemental strand, 12163883 - 12163662
Alignment:
| Q |
525 |
tctaggttaattgagaacatgatcagaggctgtaaaatagtgatgataatgcagaattcattaataatgtaatatgtcatcaaaacctagcacatattct |
624 |
Q |
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| T |
12163883 |
tctaggttaattgagaacatgatcagaggctgtaaaatagtgatgataatgcagaattcattaataatgtaatatgtcatcaaaacctagcacatattct |
12163784 |
T |
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| Q |
625 |
ctatacatatcaacccaaaaccttaaggaattggagaatatgggctatctattttatatatcaaacattttgtttattcatagttgatggatgactagtt |
724 |
Q |
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| T |
12163783 |
ctatacatatcaacccaaaaccttaaggaattggagaatacgggctatctattttatatatcaaacattttgtttattcatagttgatggaagactagtt |
12163684 |
T |
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| Q |
725 |
actcacattttaacttaataat |
746 |
Q |
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| T |
12163683 |
actcataatttaacttaataat |
12163662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 272 - 448
Target Start/End: Complemental strand, 12164143 - 12163967
Alignment:
| Q |
272 |
tcatcacaaagaaaatgattttgactgttagtacttagtagtatatatggtatcggtagtttgtgtttagataataaaatccagcaaaacgaggttggca |
371 |
Q |
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| T |
12164143 |
tcatcacaaagaaaatgattttgactgttagtacttagtagtatatatggtatcggtagtttgtgtttagataataaaatccagcaaaacgaggttggca |
12164044 |
T |
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| Q |
372 |
tttaatcatttagcatgtgcatgctcaactatttgtgcatgtttctttataattgtagtagaatccatgatcagtgt |
448 |
Q |
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| T |
12164043 |
tttaatcatttagcatgtgcatgctcaactatttgtgcatgtttctttataattgtagtagaatccatgatcagtgt |
12163967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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