View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_30 (Length: 453)
Name: NF16904_low_30
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 37892543 - 37892122
Alignment:
| Q |
18 |
ctaatggtaagaggtttgagctaccaaactttgacatctgtaagaataaagaaatcgttccgtctaaaccctaaac-------tctaaaaaacctaacca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||| |
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| T |
37892543 |
ctaatggtaagaggtttgagctaccaaactttgacatctgtaagaataaagaaatcgtccggtctaaaccctaaaccctaaactctaaaaaaactaacca |
37892444 |
T |
|
| Q |
111 |
aacataatttgaactacaatttgaaggtaagtcctgtttctaggagtttacttccacaacagtatgtatggcataagtggataccatttcagggaaaaat |
210 |
Q |
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| T |
37892443 |
aacataatttgaactacaatttgaaggtaagtcctgtttctaggagtttacttccacaacagtatgtatggcataagtggataccatttcagggaaaaat |
37892344 |
T |
|
| Q |
211 |
aacaaaagatcaatcaatttcaatatattactcttatatcttaagttgcatacacagttaaaaggcacagtaacactacaagctcaacttttgaattcga |
310 |
Q |
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| T |
37892343 |
aacaaaagatcaatcaatttcaatatattactcttatatcttaagttgcatacacagttaaaaggcacagtaacactacaagctcaacttttgaattcga |
37892244 |
T |
|
| Q |
311 |
ttttgagataacatgctataactttacctcttccgtgctttcctttttctagactctgtcttttgaaatttctttctagaaacaaatttactcttcggtt |
410 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37892243 |
ttttgagacaacatgctataactttacctcttccgtgctttcctttttctagactctgtcttttgaaatttctttctagaaacaaatttactcttcggtt |
37892144 |
T |
|
| Q |
411 |
tcagttttaactcaggtgagaa |
432 |
Q |
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| T |
37892143 |
tcagttttaactcaggtgagaa |
37892122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 129 - 432
Target Start/End: Complemental strand, 37187574 - 37187271
Alignment:
| Q |
129 |
atttgaaggtaagtcctgtttctaggagtttacttccacaacagtatgtatggcataagtggataccatttcagggaaaaataacaaaagatcaatcaat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37187574 |
atttgaaggtaagtcctgtttctaggagtttacttccataacagtatgtatggcataagtggataccatttcagggaaaaataacaaaagaccaatcaat |
37187475 |
T |
|
| Q |
229 |
ttcaatatattactcttatatcttaagttgcatacacagttaaaaggcacagtaacactacaagctcaacttttgaattcgattttgagataacatgcta |
328 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |||| |
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| T |
37187474 |
ttcaatatattactcttatacattaagttgcatacacagttaaaaggcacagtaacattacaagctcaacttctgaattcgattttgagacaacaggcta |
37187375 |
T |
|
| Q |
329 |
taactttacctcttccgtgctttcctttttctagactctgtcttttgaaatttctttctagaaacaaatttactcttcggtttcagttttaactcaggtg |
428 |
Q |
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|||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37187374 |
taactttacctctttcgtgctttccttcttctagactccgtcttttgaaatttctttctagaaacaaatttactctttggtttcagttttaactcaggtg |
37187275 |
T |
|
| Q |
429 |
agaa |
432 |
Q |
| |
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|||| |
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| T |
37187274 |
agaa |
37187271 |
T |
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