View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_31 (Length: 452)
Name: NF16904_low_31
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Original strand, 29963232 - 29963658
Alignment:
| Q |
20 |
atcaagcattagaaaaagctctaaatatgcataaattaattaacacttaaagtaagacactatagatatgtgtgatttattatatggtgatgaaaaatca |
119 |
Q |
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| T |
29963232 |
atcaggcattagaaaaagcactacatatgcataaattaattaacacttaaagtaagacactatagatatgtgtgatttattatatggtgataaaaaatca |
29963331 |
T |
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| Q |
120 |
gatccaattaagtagctcgaacaagtggtgaatgaggcattggtgaatgaggagacatcatgtgaggagacataacattctcatcaaaccttcttgaaga |
219 |
Q |
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| T |
29963332 |
gatccaattaagtagctcgaacaagtggtgaatgaggcattggtgaatgaggagacatcatgtgaggagacataacattctcatcaaaccttcttgaaga |
29963431 |
T |
|
| Q |
220 |
aaagctaagtctaagattactcttccaacgtttgatttcaactgttttccctttttctcttccattaacaaatgctctaattctcctcaatgcaatctca |
319 |
Q |
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| T |
29963432 |
aaagctaagtctaagattactcttccaacgtttgatttcaactgttttccctttttctcttccattaacaaatgctctaattctcctcaatgcaatctca |
29963531 |
T |
|
| Q |
320 |
actgtttcatgatccatgttagcaaaacaaactctataccaaccaggctcagagcaattaaaagccgaacccggcgaaacattgagctttacttcattga |
419 |
Q |
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| T |
29963532 |
actgtttcatgatccatgttagcaaaacaaactctataccaaccaggctcagagcaattaaaagccgaacccggcgaaacattaagctttacttcattga |
29963631 |
T |
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| Q |
420 |
taatcaaacgccatagtttcatctcac |
446 |
Q |
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| T |
29963632 |
taatcaaacgccaaagtttcatttcac |
29963658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 423
Target Start/End: Complemental strand, 10969710 - 10969574
Alignment:
| Q |
287 |
acaaatgctctaattctcctcaatgcaatctcaactgtttcatgatccatgttagcaaaacaaactctataccaaccaggctcagagcaattaaaagccg |
386 |
Q |
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||||||||||| || || ||||||||| || || ||||||| ||| || |||||||||||||| ||| |||||||| ||||||||||||||||| | |
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| T |
10969710 |
acaaatgctcttatcctttgcaatgcaatttccaccgtttcatcatcaatattagcaaaacaaaccctaaaccaaccaacctcagagcaattaaaagaag |
10969611 |
T |
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| Q |
387 |
aacccggcgaaacattgagctttacttcattgataat |
423 |
Q |
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| T |
10969610 |
accccggtgacacattaagcttcacctcattaataat |
10969574 |
T |
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