View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16904_low_32 (Length: 447)
Name: NF16904_low_32
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_32 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Complemental strand, 34140595 - 34140164
Alignment:
| Q |
16 |
tctcctcattttccccaaccaatttatgatgcttgcagcatagtcaaaaagactaagagcaacataaagaccaataccagcaacaataccatttgctatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34140595 |
tctcctcattttccccaaccaatttatgatgcttgcagcatagtcaaaaagactaagagcaacataaagaccaataccagcaacaataccatttgctatg |
34140496 |
T |
|
| Q |
116 |
gaataagttagaggcattaaaatcattatagcaaaagcaggaactgcttcctttatattagtccagtcaatatccttcacaactttcatcatcattaccc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34140495 |
gaataagttagaggcattaaaatcattatagcaaaagcaggaactgcttcctttatattagtccagtcaatatccttcacaactttcatcatcattaccc |
34140396 |
T |
|
| Q |
216 |
caaccatcactagtgaaggacctatagcccatggaggaacacttgacaacaaaggagtgaaaaacaatgacaaaaagaaaaacaacccgatgatcacagc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34140395 |
caaccatcactagtgaaggacctatagcccatggaggaacacttgacaacaaaggagtgaaaaacaatgacaaaaagaaaaacaacccgatgatcacagc |
34140296 |
T |
|
| Q |
316 |
cgttaatcctgtcctaccaccttctctcatcccagctgatgattccacaaatgttgcagttgttgtaacacctaaggctgaccctacaatagtaccagct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34140295 |
cgttaatcctgtcctaccaccttctctcatcccagctgacgattccacaaatgttgcagttgttgtaacacctaaggctgaccctacaatagtaccagct |
34140196 |
T |
|
| Q |
416 |
gcatcaacaatatatgccatatattcaccttc |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34140195 |
gcatcaacaatatatgccatatattcaccttc |
34140164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University