View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_34 (Length: 443)

Name: NF16904_low_34
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_34
NF16904_low_34
[»] chr6 (22 HSPs)
chr6 (6-198)||(3626098-3626290)
chr6 (214-413)||(3625863-3626062)
chr6 (333-413)||(12591629-12591709)
chr6 (338-413)||(15360223-15360298)
chr6 (338-413)||(9238972-9239047)
chr6 (338-413)||(34147343-34147418)
chr6 (338-413)||(34159959-34160034)
chr6 (333-413)||(654271-654351)
chr6 (338-413)||(22576064-22576139)
chr6 (341-409)||(11448871-11448939)
chr6 (338-413)||(5360196-5360271)
chr6 (338-413)||(8479309-8479384)
chr6 (338-409)||(11007162-11007233)
chr6 (338-413)||(28672064-28672139)
chr6 (338-384)||(21148664-21148710)
chr6 (335-388)||(9843932-9843985)
chr6 (338-403)||(13753237-13753302)
chr6 (338-411)||(21982447-21982520)
chr6 (338-413)||(3222760-3222834)
chr6 (356-410)||(17706435-17706489)
chr6 (338-388)||(33499471-33499521)
chr6 (353-413)||(17081179-17081239)
[»] chr2 (26 HSPs)
chr2 (338-413)||(32845088-32845163)
chr2 (338-412)||(15037956-15038030)
chr2 (338-413)||(24196001-24196076)
chr2 (339-413)||(4852556-4852630)
chr2 (340-413)||(41329842-41329915)
chr2 (338-413)||(18976550-18976625)
chr2 (338-413)||(27269475-27269550)
chr2 (338-413)||(33827698-33827773)
chr2 (338-412)||(44946179-44946253)
chr2 (339-413)||(44976279-44976353)
chr2 (338-413)||(8192476-8192551)
chr2 (338-413)||(25293163-25293238)
chr2 (335-413)||(4567562-4567640)
chr2 (338-412)||(11941336-11941410)
chr2 (338-388)||(14946776-14946826)
chr2 (339-413)||(17324764-17324838)
chr2 (338-412)||(32526211-32526285)
chr2 (351-412)||(27290598-27290659)
chr2 (338-410)||(6714409-6714481)
chr2 (338-410)||(19054022-19054094)
chr2 (354-413)||(10582115-10582174)
chr2 (353-392)||(40997496-40997535)
chr2 (338-413)||(41313989-41314064)
chr2 (339-388)||(918849-918898)
chr2 (364-413)||(5394040-5394089)
chr2 (364-409)||(34516537-34516582)
[»] chr3 (39 HSPs)
chr3 (338-413)||(40133574-40133649)
chr3 (338-410)||(48977385-48977457)
chr3 (338-413)||(7485650-7485725)
chr3 (338-413)||(21362940-21363015)
chr3 (334-412)||(25344183-25344261)
chr3 (338-412)||(30257621-30257695)
chr3 (340-413)||(52821760-52821833)
chr3 (338-413)||(7470340-7470415)
chr3 (338-413)||(30807278-30807353)
chr3 (338-413)||(35492908-35492983)
chr3 (338-413)||(45529879-45529954)
chr3 (338-413)||(46576345-46576420)
chr3 (338-412)||(53424302-53424376)
chr3 (338-399)||(32151422-32151482)
chr3 (338-413)||(8456275-8456350)
chr3 (338-413)||(18177012-18177087)
chr3 (338-413)||(25289839-25289914)
chr3 (342-413)||(26174114-26174185)
chr3 (338-413)||(31537963-31538038)
chr3 (338-413)||(34492700-34492775)
chr3 (338-413)||(40940822-40940897)
chr3 (338-413)||(52455774-52455849)
chr3 (340-410)||(25379760-25379830)
chr3 (348-413)||(26108299-26108364)
chr3 (348-411)||(9853623-9853686)
chr3 (338-413)||(15566624-15566698)
chr3 (338-413)||(45272541-45272616)
chr3 (338-413)||(49258387-49258462)
chr3 (338-413)||(50582989-50583064)
chr3 (339-413)||(4462631-4462705)
chr3 (340-413)||(11390601-11390674)
chr3 (353-409)||(53234039-53234095)
chr3 (338-413)||(4252521-4252596)
chr3 (338-413)||(55287800-55287875)
chr3 (338-408)||(29915399-29915469)
chr3 (338-408)||(29964552-29964622)
chr3 (335-413)||(53288837-53288915)
chr3 (364-413)||(10083944-10083993)
chr3 (364-413)||(10190867-10190916)
[»] chr1 (29 HSPs)
chr1 (338-413)||(46607807-46607882)
chr1 (338-413)||(34778339-34778414)
chr1 (338-413)||(4621362-4621437)
chr1 (338-413)||(7197371-7197446)
chr1 (338-413)||(7766852-7766927)
chr1 (338-413)||(24674390-24674465)
chr1 (339-413)||(2272342-2272416)
chr1 (338-413)||(168198-168273)
chr1 (338-409)||(8077644-8077715)
chr1 (338-413)||(23232390-23232465)
chr1 (338-413)||(29057462-29057537)
chr1 (338-413)||(30677173-30677248)
chr1 (334-413)||(46113527-46113606)
chr1 (347-413)||(1378904-1378970)
chr1 (338-412)||(32729542-32729616)
chr1 (338-409)||(15059531-15059602)
chr1 (338-409)||(27454995-27455066)
chr1 (339-413)||(24122021-24122095)
chr1 (349-410)||(17935777-17935838)
chr1 (336-385)||(52135125-52135174)
chr1 (338-413)||(1818731-1818806)
chr1 (338-413)||(14258552-14258627)
chr1 (338-413)||(25237114-25237189)
chr1 (351-409)||(10059065-10059123)
chr1 (364-410)||(37351589-37351635)
chr1 (351-412)||(7578419-7578480)
chr1 (364-413)||(33905635-33905684)
chr1 (365-413)||(36156013-36156061)
chr1 (338-386)||(47091687-47091735)
[»] chr5 (36 HSPs)
chr5 (335-413)||(8484786-8484864)
chr5 (333-407)||(27487686-27487760)
chr5 (334-390)||(25750759-25750815)
chr5 (338-410)||(32059568-32059640)
chr5 (338-413)||(15931056-15931131)
chr5 (338-413)||(22392698-22392773)
chr5 (335-413)||(38631086-38631164)
chr5 (331-413)||(38684198-38684280)
chr5 (335-392)||(4603771-4603828)
chr5 (334-409)||(10399766-10399841)
chr5 (338-413)||(11926627-11926702)
chr5 (338-413)||(13038579-13038654)
chr5 (338-413)||(13108574-13108649)
chr5 (338-413)||(15641230-15641305)
chr5 (338-413)||(25586929-25587004)
chr5 (338-413)||(36954815-36954890)
chr5 (338-412)||(31288072-31288146)
chr5 (338-390)||(5067298-5067350)
chr5 (336-411)||(930612-930687)
chr5 (338-413)||(1827655-1827730)
chr5 (338-413)||(19145536-19145611)
chr5 (338-413)||(23270647-23270722)
chr5 (338-413)||(33709626-33709700)
chr5 (338-413)||(34310139-34310214)
chr5 (340-411)||(37397712-37397783)
chr5 (364-412)||(12398574-12398622)
chr5 (338-410)||(34049819-34049891)
chr5 (340-395)||(3715052-3715107)
chr5 (347-410)||(10869693-10869756)
chr5 (338-413)||(27498856-27498931)
chr5 (338-388)||(12317300-12317350)
chr5 (347-413)||(15971247-15971313)
chr5 (347-413)||(42193491-42193557)
chr5 (352-413)||(37495058-37495119)
chr5 (341-385)||(204177-204221)
chr5 (365-413)||(18207231-18207279)
[»] scaffold0576 (1 HSPs)
scaffold0576 (338-413)||(5207-5282)
[»] scaffold0068 (1 HSPs)
scaffold0068 (338-413)||(41769-41844)
[»] chr8 (32 HSPs)
chr8 (338-413)||(3734748-3734823)
chr8 (338-413)||(19471610-19471685)
chr8 (338-413)||(19542534-19542609)
chr8 (338-413)||(19590087-19590162)
chr8 (335-412)||(27746461-27746538)
chr8 (338-414)||(18532108-18532184)
chr8 (338-413)||(34237780-34237855)
chr8 (338-413)||(42643243-42643318)
chr8 (334-403)||(8042651-8042720)
chr8 (340-413)||(28193477-28193550)
chr8 (338-413)||(4718646-4718721)
chr8 (338-413)||(7558068-7558143)
chr8 (338-413)||(39349257-39349332)
chr8 (338-413)||(42328006-42328080)
chr8 (334-388)||(36848899-36848953)
chr8 (338-390)||(2618187-2618239)
chr8 (333-413)||(15259531-15259611)
chr8 (338-410)||(20305909-20305981)
chr8 (338-410)||(21092542-21092614)
chr8 (338-410)||(26168976-26169048)
chr8 (335-413)||(264524-264602)
chr8 (335-413)||(651319-651397)
chr8 (335-413)||(837054-837132)
chr8 (334-388)||(34694726-34694780)
chr8 (340-413)||(24018385-24018458)
chr8 (348-412)||(21603241-21603305)
chr8 (334-388)||(28908818-28908872)
chr8 (364-413)||(14632981-14633030)
chr8 (364-413)||(20469944-20469993)
chr8 (335-408)||(21667548-21667621)
chr8 (365-413)||(2166727-2166775)
chr8 (373-413)||(9047403-9047443)
[»] chr7 (39 HSPs)
chr7 (338-413)||(2751272-2751347)
chr7 (328-413)||(7275268-7275353)
chr7 (338-413)||(2103056-2103131)
chr7 (338-413)||(7175987-7176062)
chr7 (338-413)||(21217958-21218033)
chr7 (338-413)||(32849592-32849667)
chr7 (338-413)||(40543035-40543110)
chr7 (339-413)||(22119890-22119964)
chr7 (340-413)||(27312155-27312228)
chr7 (340-413)||(42814867-42814940)
chr7 (333-409)||(23854392-23854468)
chr7 (338-413)||(7799957-7800032)
chr7 (334-413)||(9718112-9718191)
chr7 (338-413)||(10091189-10091264)
chr7 (338-413)||(18044108-18044183)
chr7 (334-413)||(28089813-28089892)
chr7 (338-392)||(2344300-2344354)
chr7 (338-409)||(31197592-31197663)
chr7 (339-389)||(13332572-13332622)
chr7 (333-403)||(17212049-17212119)
chr7 (335-413)||(21835149-21835227)
chr7 (347-413)||(22696330-22696396)
chr7 (335-413)||(36173033-36173111)
chr7 (338-387)||(8435846-8435895)
chr7 (338-390)||(39145800-39145852)
chr7 (338-413)||(11997850-11997925)
chr7 (338-413)||(21370598-21370673)
chr7 (354-413)||(22703503-22703562)
chr7 (338-413)||(25333420-25333495)
chr7 (338-413)||(27009360-27009435)
chr7 (339-406)||(28003838-28003905)
chr7 (338-413)||(31713020-31713095)
chr7 (338-413)||(40332100-40332175)
chr7 (338-388)||(21574253-21574303)
chr7 (351-413)||(22299863-22299925)
chr7 (347-413)||(23012633-23012699)
chr7 (335-388)||(9683824-9683877)
chr7 (340-413)||(28646972-28647045)
chr7 (347-388)||(42913663-42913704)
[»] chr4 (30 HSPs)
chr4 (338-409)||(19660661-19660732)
chr4 (338-413)||(25852211-25852286)
chr4 (338-413)||(13873420-13873495)
chr4 (338-413)||(54127467-54127542)
chr4 (347-413)||(51535619-51535685)
chr4 (333-413)||(32986189-32986269)
chr4 (333-412)||(1985828-1985907)
chr4 (334-413)||(13584379-13584458)
chr4 (335-390)||(20566343-20566398)
chr4 (338-413)||(52983616-52983691)
chr4 (339-413)||(42245744-42245818)
chr4 (338-408)||(46714389-46714459)
chr4 (333-413)||(35674866-35674946)
chr4 (338-413)||(22625195-22625270)
chr4 (338-413)||(27528920-27528995)
chr4 (338-413)||(33696404-33696479)
chr4 (338-409)||(34844887-34844958)
chr4 (347-410)||(35229174-35229237)
chr4 (338-409)||(40058981-40059052)
chr4 (338-412)||(36131636-36131710)
chr4 (364-412)||(7392089-7392137)
chr4 (342-382)||(10125783-10125823)
chr4 (365-413)||(12500183-12500231)
chr4 (338-385)||(5609355-5609402)
chr4 (364-411)||(20078111-20078158)
chr4 (340-390)||(34722169-34722219)
chr4 (339-409)||(43719194-43719264)
chr4 (348-390)||(55961890-55961932)
chr4 (348-413)||(2351020-2351085)
chr4 (335-388)||(13550202-13550255)
[»] scaffold0026 (1 HSPs)
scaffold0026 (338-413)||(97491-97566)
[»] scaffold0623 (1 HSPs)
scaffold0623 (339-413)||(1181-1255)
[»] scaffold0366 (2 HSPs)
scaffold0366 (339-413)||(9424-9498)
scaffold0366 (339-413)||(12125-12199)
[»] scaffold0051 (1 HSPs)
scaffold0051 (338-413)||(52996-53071)
[»] scaffold0459 (1 HSPs)
scaffold0459 (339-413)||(10818-10892)
[»] scaffold0199 (1 HSPs)
scaffold0199 (338-408)||(8537-8607)
[»] scaffold0328 (1 HSPs)
scaffold0328 (338-413)||(14988-15063)
[»] scaffold0070 (1 HSPs)
scaffold0070 (338-413)||(40322-40397)
[»] scaffold0217 (1 HSPs)
scaffold0217 (340-413)||(7434-7507)
[»] scaffold0049 (1 HSPs)
scaffold0049 (333-410)||(66754-66831)
[»] scaffold0157 (1 HSPs)
scaffold0157 (365-413)||(20246-20294)
[»] scaffold0717 (1 HSPs)
scaffold0717 (347-413)||(83-149)
[»] scaffold0240 (1 HSPs)
scaffold0240 (348-390)||(12902-12944)
[»] scaffold0028 (1 HSPs)
scaffold0028 (338-388)||(27773-27823)
[»] scaffold0019 (1 HSPs)
scaffold0019 (364-413)||(161832-161881)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 3626290 - 3626098
Alignment:
Q  6 agtgagatgaatagaatccctaatcatttgcttaattaagaggtccaaatctttaaccgattgatgttaaaaatactaaacttagtgtgcgtctcctgac 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3626290 agtgatatgaatagaatccctaatcatttgcttaattaagaggtccaaatctttaaccgattgatgttaaaaatactaaacttagtgtgcgcctcctgac 3626191  T
Q  106 ctcctcgaaatcttatatttgattctcctcgacgataatttaaacgggattgtttagcttctttaaaaactataaaaaacttagcgaattgat 198  Q
    || ||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||  |||| ||| ||||||||    
T  3626190 cttctcgaaatcttatgtttgattctcctcgacgataatttaagcgggattgtttaacttctttaaaaactatactaaacatagtgaattgat 3626098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 214 - 413
Target Start/End: Complemental strand, 3626062 - 3625863
Alignment:
Q  214 ggaccataagacttggttaaatattgatgtacatcaccgaatgtgagaagcaaaactataccacaaacaagctaaacaatttaaaagaagaattgtgaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3626062 ggaccataagacttggttaaatattgatgtacatcaccgaatgtgagaagcaaaactataccacaaacaagctaaacaatttaaaagaagaattgtgaaa 3625963  T
Q  314 aataagtcttataaacttggaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||| ||||||||| ||| |||||||| |||||  |||||||||| |||| |||||  |||||| |||||||||  | |||||||||||||||||    
T  3625962 aataagtctcataaacttgaaaacccatttggggttggtttagtggttaatttggaattttaaagtttggtcctccaaagatctcaggtttgattccctc 3625863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 413
Target Start/End: Original strand, 12591629 - 12591709
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  12591629 gaaacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctc 12591709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 15360298 - 15360223
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  15360298 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctc 15360223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 9238972 - 9239047
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  9238972 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 9239047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 34147343 - 34147418
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||||| |||| |||| ||||||| |||||||||    
T  34147343 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcttccagaagtctcaggttcgattccctc 34147418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 34159959 - 34160034
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||||| |||| |||| ||||||| |||||||||    
T  34159959 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcttccagaagtctcaggttcgattccctc 34160034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 654351 - 654271
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| ||||||||  |||||||||||| | ||||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  654351 gaaacccatttgggtttggcctagtggctgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 654271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 22576064 - 22576139
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || |||| || |||||||||    
T  22576064 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcagattcgattccctc 22576139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 11448871 - 11448939
Alignment:
Q  341 tttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    ||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||    
T  11448871 tttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 11448939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 5360271 - 5360196
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||||||| ||||||  |||||||| |||||||||||| ||| | | || ||||||| |||||||||    
T  5360271 ccatttggagttggcctggtggttggcttgggatcttggagtttgcttctcaagaggtctcaggttcgattccctc 5360196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 8479309 - 8479384
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||||||| ||||||||| ||||||| ||||||||  ||  ||||||||| |||| ||||    
T  8479309 ccatttggggttggcctagtggttgacttgggatcttggagtgtgctcctcttaagatttcaggttcgatttcctc 8479384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 11007162 - 11007233
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||| ||||  |||||||||  |||||||| |||||||||||||||||||| || ||||||| |||||    
T  11007162 ccatttggggttgatctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattc 11007233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 28672064 - 28672139
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||||||| ||||| ||| |||||||||||||||| | | || | ||||| |||||||||    
T  28672064 ccatttggggttggcctagtggttgacttgagatcttggagtttgctcctctagaggtcttaggttcgattccctc 28672139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 21148710 - 21148664
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgct 384  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||    
T  21148710 ccatttggagttggcctagtggttggcttgggatcttggagtttgct 21148664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 9843932 - 9843985
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    ||||||||||| ||||| |||||||||  |||||||| ||||||||||||||||    
T  9843932 aatccatttggggttggtctagtggttggcttgggatcttggagtttgctcctc 9843985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 13753237 - 13753302
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtt 403  Q
    |||||||| |||||||||||||||  ||| |||| |||||||||||||||||| | || |||||||    
T  13753237 ccatttggggttggcctagtggttggctttggatcttggagtttgctcctccagaggtctcaggtt 13753302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 411
Target Start/End: Complemental strand, 21982520 - 21982447
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccc 411  Q
    |||||||| |||||||||||||||  |||||||| ||| |||||||||||||| | || | ||||| |||||||    
T  21982520 ccatttggggttggcctagtggttggcttgggatcttgaagtttgctcctccagaggtctgaggttcgattccc 21982447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 3222834 - 3222760
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| ||| ||||||||||| || | || ||||||| |||||||||    
T  3222834 ccatttggggttggcctagtggttggcttgggatcttgcagtttgctcct-cagaggtctcaggttcgattccctc 3222760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 17706489 - 17706435
Alignment:
Q  356 gtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||| ||||||||| |||||||||||||||||| |||| ||| ||| ||||||    
T  17706489 gtggttgacttgggatcttggagtttgctcctccagaagtctcaagttcgattcc 17706435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 33499471 - 33499521
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    |||||||| |||||||| ||||||  |||||||| ||||||||||||||||    
T  33499471 ccatttggggttggcctggtggttggcttgggatcttggagtttgctcctc 33499521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 17081239 - 17081179
Alignment:
Q  353 ctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||||  ||| |||| |||||||||||||||||| | || ||| |||||||||||||    
T  17081239 ctagtggttggcttaggatcttggagtttgctcctccagatgtctcaagtttgattccctc 17081179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 32845088 - 32845163
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  32845088 ccatttggggttggcctagtagttagcttgggatcttggagtttgctcctccaaaagtttcaggttcgattccctc 32845163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 15037956 - 15038030
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||| ||||||||||||||| ||| ||||| |||||||||||||||||||| || ||||||| ||||||||    
T  15037956 ccatttggggttggcctagtggttgactcgggatcttggagtttgctcctccaaaggtctcaggttcgattccct 15038030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 24196001 - 24196076
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  ||||||||||||| ||| ||||||||| | |||||||||| |||||||||    
T  24196001 ccatttggggttggcctagtggttggcttgggattttggggttcgctcctccagaggtttcaggttcgattccctc 24196076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 4852556 - 4852630
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||| |||||||||| |||||| || |||||||||||||||||||| || ||||||| |||||||||    
T  4852556 catttggggttgacctagtggttgacttggaatcttggagtttgctcctccaaaggtctcaggttcgattccctc 4852630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 41329842 - 41329915
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| ||||||||||||||||  ||||||| || ||||||||||||||||| ||||||| || |||||||||    
T  41329842 atttggggttggcctagtggttagtttgggatcttagagtttgctcctccaaaggtttcagattcgattccctc 41329915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 18976625 - 18976550
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||| ||| |||||||||    
T  18976625 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcatgttcgattccctc 18976550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 27269550 - 27269475
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||| ||||||||  |||||||| || ||||||||||||| ||| |||| |||||||||||||||    
T  27269550 ccatttggggttggcatagtggttggcttgggatcttcgagtttgctcctctaaaggttttaggtttgattccctc 27269475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 33827773 - 33827698
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||| ||||||||||| | || ||||||| |||||||||    
T  33827773 ccatttggggttggcctagtggttggcttgggatcttggagattgctcctccagaggtctcaggttcgattccctc 33827698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 44946253 - 44946179
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||| ||||| |||||||||  |||||||| |||||||||||||||||| | || ||||||| ||||||||    
T  44946253 ccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccct 44946179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 44976353 - 44976279
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||  |||||||| |||| ||||||||||||| | || ||||||| |||||||||    
T  44976353 catttggggttggcctagtggttggcttgggatcttggggtttgctcctccagaggtctcaggttcgattccctc 44976279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 8192551 - 8192476
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| ||||||| ||||||||  || || ||||||| |||||||||    
T  8192551 ccatttggggttggcctagtggttggcttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctc 8192476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 25293163 - 25293238
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||  ||||| ||||||||| ||||||||| |||||||||||||||| | | || ||||||| |||||||||    
T  25293163 ccatttgaggttggtctagtggttgacttgggatcttggagtttgctcctcgagaggtctcaggttcgattccctc 25293238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 4567640 - 4567562
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||| ||||||||||| |||  |||||||| ||| ||||||||||| || |||| ||||||| |||| ||||    
T  4567640 aatccatttggggttggcctagtagttggcttgggatcttgaagtttgctccttcagaagtctcaggttcgatttcctc 4567562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 11941410 - 11941336
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||| ||||| |||||||||  |||||||| |||||||||||||||||| | || |||||||  |||||||    
T  11941410 ccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccct 11941336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 14946776 - 14946826
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    |||||||||||||||||||||||| ||||| ||| ||| ||||||||||||    
T  14946776 ccatttggagttggcctagtggttgacttgagatcttgaagtttgctcctc 14946826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 17324764 - 17324838
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||   |||| || |||||||||||||||||| | || ||||||| |||||||||    
T  17324764 catttggggttggcctagtggttggtttggtatcttggagtttgctcctccagaggtctcaggttcgattccctc 17324838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 32526285 - 32526211
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    ||||||||||||||| |||||||| | ||||||| ||| ||||||||||||  || || ||||||| ||||||||    
T  32526285 ccatttggagttggcttagtggttgatttgggatcttgaagtttgctcctctcaaggtctcaggttcgattccct 32526211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 27290598 - 27290659
Alignment:
Q  351 gcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||||||  |||||||| |||||||||||||||||| | || ||||||| ||||||||    
T  27290598 gcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccct 27290659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 6714481 - 6714409
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    ||||||||  |||||||| |||||  |||| ||| |||||||||||||||||| | || ||||||||||||||    
T  6714481 ccatttgggattggcctaatggttggcttgagatcttggagtttgctcctccagaggtctcaggtttgattcc 6714409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 19054022 - 19054094
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||||| || ||||||||| ||  |||| ||| ||||||| |||||||||||| || ||||||||||||||    
T  19054022 ccatttggggtgggcctagtgattggcttgagatcttggagtctgctcctccaaaggtctcaggtttgattcc 19054094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 10582174 - 10582115
Alignment:
Q  354 tagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  10582174 tagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 10582115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Complemental strand, 40997535 - 40997496
Alignment:
Q  353 ctagtggttaacttgggattttggagtttgctcctccaaa 392  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  40997535 ctagtggttgacttgggatcttggagtttgctcctccaaa 40997496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 41313989 - 41314064
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||| | ||||||||   ||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  41313989 ccatttggggttgccgtagtggttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 41314064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 918898 - 918849
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    ||||||| |||| ||||||||||  |||||||||||| ||||||||||||    
T  918898 catttggggttgacctagtggttggcttgggattttgaagtttgctcctc 918849  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 5394040 - 5394089
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| ||| |||||||||||||||||||| || ||||||| |||||||||    
T  5394040 cttgagatcttggagtttgctcctccaaaggtctcaggttcgattccctc 5394089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 34516582 - 34516537
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||| |||||||||||||||||| | |||||||||| |||||    
T  34516582 cttgggatcttggagtttgctcctccagaggtttcaggttcgattc 34516537  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 40133649 - 40133574
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  40133649 ccatttggggttggcctagtggttggcttgggattttggagtttgctcctccaaaggtctcaggttcgattccctc 40133574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 48977385 - 48977457
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| || ||||||| ||||||    
T  48977385 ccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattcc 48977457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 7485725 - 7485650
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||| |||||||| ||||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  7485725 ccatttggggttggcatagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctc 7485650  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 21362940 - 21363015
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  21362940 ccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 21363015  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 412
Target Start/End: Complemental strand, 25344261 - 25344183
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||| |  | ||||||||||||||||    
T  25344261 aaatccatttggggttggcctagtggttgacttgggatcttcgagtttgctcctccagagatctcaggtttgattccct 25344183  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 30257621 - 30257695
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  30257621 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccct 30257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 52821833 - 52821760
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  52821833 atttggtgttggcctagtggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 52821760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 7470415 - 7470340
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||| ||||||||||| ||||| ||| |||||||||||||||||||| || ||||||| |||||||||    
T  7470415 ccatttggggtttgcctagtggttgacttgagatcttggagtttgctcctccaaaggtctcaggttcgattccctc 7470340  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 30807353 - 30807278
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  30807353 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 30807278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 35492908 - 35492983
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  35492908 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 35492983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 45529954 - 45529879
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  45529954 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 45529879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 46576345 - 46576420
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  46576345 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 46576420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 53424376 - 53424302
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| ||||||||    
T  53424376 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccct 53424302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 32151422 - 32151482
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttca 399  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  32151422 ccatttgg-gttggcctagtggttgacttgggatcttggagtttgctcctccaaaggtttca 32151482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 8456350 - 8456275
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| || ||||||||||||||| | || ||||||| |||||||||    
T  8456350 ccatttggggttggcctagtggttggcttgggatcttcgagtttgctcctccagaggtctcaggttcgattccctc 8456275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 18177087 - 18177012
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||||||| |||| | || ||||||| |||||||||    
T  18177087 ccatttggggttggcctagtggttgacttgagatcttggagtttgctcttccagaggtatcaggttcgattccctc 18177012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 25289914 - 25289839
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||| |||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  25289914 ccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 25289839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 413
Target Start/End: Original strand, 26174114 - 26174185
Alignment:
Q  342 ttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||| ||||    
T  26174114 ttggagttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctc 26174185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 31538038 - 31537963
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  ||| |||| |||||||||||||||||| | || ||| |||||||||||||    
T  31538038 ccatttggggttggcctagtggttggcttaggatcttggagtttgctcctccagaggtctcatgtttgattccctc 31537963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 34492775 - 34492700
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||| ||| |||||||||    
T  34492775 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcatgttcgattccctc 34492700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 40940822 - 40940897
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||| |||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  40940822 ccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 40940897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 52455849 - 52455774
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  || ||||| |||||||||||||||||| | || ||||||| |||||||||    
T  52455849 ccatttggggttggcctagtggttggctagggatcttggagtttgctcctccagaggtctcaggttcgattccctc 52455774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 410
Target Start/End: Original strand, 25379760 - 25379830
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| ||||||    
T  25379760 atttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattcc 25379830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 26108299 - 26108364
Alignment:
Q  348 ttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  26108299 ttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 26108364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 411
Target Start/End: Original strand, 9853623 - 9853686
Alignment:
Q  348 ttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccc 411  Q
    |||| ||||||||||  ||||||| |||||||||||||||||||| || ||||||| |||||||    
T  9853623 ttggtctagtggttagtttgggatcttggagtttgctcctccaaaggtctcaggttcgattccc 9853686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 15566698 - 15566624
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||| ||| |||||||||||||||||| | || ||||||| |||||||||    
T  15566698 ccatttgg-gttggcctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctc 15566624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 45272616 - 45272541
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||| |||  |||||||| |||||||||||||||||| | || |||| || |||||||||    
T  45272616 ccatttggggttggcctagtcgttggcttgggatcttggagtttgctcctccagatgtctcagtttcgattccctc 45272541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 49258462 - 49258387
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||| |||||||||||  |||||||| ||| |||||||||||||| | || ||||||| |||||||||    
T  49258462 ccatttggggtttgcctagtggttggcttgggatcttgcagtttgctcctccagaggtctcaggttcgattccctc 49258387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 50582989 - 50583064
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||   ||||||| ||||||||||||||||  || |||||||||| |||| ||||    
T  50582989 ccatttggggttggcctagtggttggtttgggatcttggagtttgctcctcttaaggtttcaggttcgatttcctc 50583064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 4462631 - 4462705
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||  |||| ||| |||||||||||| || ||||||| ||| ||| |||||||||    
T  4462631 catttggggttggcctagtggttggcttgagatcttggagtttgctacttcaaaagtctcatgttcgattccctc 4462705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 11390601 - 11390674
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| |||||||||||||||   ||| ||| ||||||||| ||||||||||  |||||||||||||| ||||    
T  11390601 atttggggttggcctagtggttggtttgagatcttggagttttctcctccaaagatttcaggtttgatttcctc 11390674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 53234095 - 53234039
Alignment:
Q  353 ctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||||  |||||||| |||||||||||||||||| |||| ||||||| |||||    
T  53234095 ctagtggttggcttgggatcttggagtttgctcctccagaagtctcaggttcgattc 53234039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 4252596 - 4252521
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||| ||| ||||||| ||||||||  || || ||| |||||||||||||    
T  4252596 ccatttggggttggcctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgattccctc 4252521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 55287800 - 55287875
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||| ||||||||  ||||| || || |||||||||||| || | |||||||||| |||||||||    
T  55287800 ccatttggggttggcatagtggttggcttggaatcttagagtttgctccttcagaggtttcaggttcgattccctc 55287875  T

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Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 29915469 - 29915399
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgatt 408  Q
    |||||| | |||| |||| ||||| ||||||||| |||||||||||||||||| | || ||||||| ||||    
T  29915469 ccatttagggttgacctaatggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgatt 29915399  T

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Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 29964622 - 29964552
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgatt 408  Q
    |||||| | |||| |||| ||||| ||||||||| |||||||||||||||||| | || ||||||| ||||    
T  29964622 ccatttagggttgacctaatggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgatt 29964552  T

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Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 53288915 - 53288837
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||| | ||||||| |||||||   ||||||| || ||||||||||||||||| || ||||| | |||||||||    
T  53288915 aatccattttgcgttggccaagtggttggtttgggatattagagtttgctcctccaaaggtctcaggctcgattccctc 53288837  T

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Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 10083993 - 10083944
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||||| | |  |||||||||||||||||    
T  10083993 cttgggatcttggagtttgctcctccagagggctcaggtttgattccctc 10083944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 10190916 - 10190867
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||||| | |  |||||||||||||||||    
T  10190916 cttgggatcttggagtttgctcctccagagggctcaggtttgattccctc 10190867  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 46607807 - 46607882
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  46607807 ccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctc 46607882  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 34778339 - 34778414
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || |||||||||||||||||    
T  34778339 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctc 34778414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 4621437 - 4621362
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  4621437 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 4621362  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 7197446 - 7197371
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  7197446 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 7197371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 7766927 - 7766852
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||| || |||||||||||||||| |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  7766927 ccattcggggttggcctagtggttagcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 7766852  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 24674390 - 24674465
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  24674390 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 24674465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 2272342 - 2272416
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| ||||||||||||||| ||||||||| || |||||||||||| || | || |||||||||||||||||    
T  2272342 catttggggttggcctagtggttgacttgggatcttagagtttgctcctacagaggtctcaggtttgattccctc 2272416  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 168198 - 168273
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||||||||||||||  |||||||| || |||||||||| | |||| || ||||||| |||||||||    
T  168198 ccatttggagttggcctagtggttggcttgggatcttagagtttgctctttcaaaggtctcaggttcgattccctc 168273  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 8077644 - 8077715
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||    
T  8077644 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 8077715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 23232465 - 23232390
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||  |||||||||||||| ||||||||| ||| ||||||||| |||| | |||||||||| |||||||||    
T  23232465 ccatttgggattggcctagtggttgacttgggatcttgaagtttgctcttccagaggtttcaggttcgattccctc 23232390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 29057537 - 29057462
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||   ||||||| |||||||||||| ||||||| || ||||||| |||||||||    
T  29057537 ccatttggggttggcctagtggttggtttgggatcttggagtttgctgctccaaaggtctcaggttcgattccctc 29057462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 30677173 - 30677248
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||| ||||||||||   ||||||| | |||||||||||||||||| || |||||||||||||||||    
T  30677173 ccatttggggttgacctagtggttggtttgggatctaggagtttgctcctccaaaggtctcaggtttgattccctc 30677248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 46113606 - 46113527
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||| |||||| |||||||||||||||   ||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  46113606 aaatcaatttggggttggcctagtggttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 46113527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 1378904 - 1378970
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| |||||||| ||||||||| ||||||||||||||||||||||| ||| ||| |||| ||||    
T  1378904 gttggcttagtggttgacttgggatcttggagtttgctcctccaaaagtctcatgttcgatttcctc 1378970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 32729542 - 32729616
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||| |||||||||||||||  |||||||| || |||||||||||||  ||||| ||||||| ||||||||    
T  32729542 ccatttggggttggcctagtggttggcttgggatcttcgagtttgctcctctcaaagtctcaggttcgattccct 32729616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 15059602 - 15059531
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||| |||||||||||||||  ||||| || |||||||||||||||||| | || ||||||| |||||    
T  15059602 ccatttggggttggcctagtggttggcttggaatcttggagtttgctcctccagaggtctcaggttcgattc 15059531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 27455066 - 27454995
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||| ||||| |||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||    
T  27455066 ccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 27454995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 24122021 - 24122095
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||| ||||||||  |||||||| |||| ||||||||||||| | || ||||||| |||||||||    
T  24122021 catttggggttggcttagtggttggcttgggatcttggggtttgctcctccagaggtctcaggttcgattccctc 24122095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 410
Target Start/End: Original strand, 17935777 - 17935838
Alignment:
Q  349 tggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||| |||||||| ||||||||| |||||||||||||||||| | || ||||||| ||||||    
T  17935777 tggcatagtggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattcc 17935838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 52135125 - 52135174
Alignment:
Q  336 atccatttggagttggcctagtggttaacttgggattttggagtttgctc 385  Q
    |||||||||| ||||| ||||||||| ||||||||| |||||||||||||    
T  52135125 atccatttggggttggtctagtggttgacttgggatcttggagtttgctc 52135174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 1818731 - 1818806
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||| || |||  ||| |||| ||||||||||||| |||| | |||||||||| |||||||||    
T  1818731 ccatttggggttggcctggtagttggcttaggatcttggagtttgctcttccagaggtttcaggttcgattccctc 1818806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 14258627 - 14258552
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||  ||||||||||||||  |||||||| |||||||||| ||||||| | || || |||| |||||||||    
T  14258627 ccatttgggcttggcctagtggttggcttgggatcttggagtttgttcctccagatgtctctggttcgattccctc 14258552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 25237189 - 25237114
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| ||||||||||| ||||||  ||||||| |||||||||||| |||  || || ||||||| |||||||||    
T  25237189 ccatttagagttggcctaatggttagtttgggatcttggagtttgcttctctcaaggtctcaggttcgattccctc 25237114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 10059065 - 10059123
Alignment:
Q  351 gcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    ||||||||||| ||||| ||| ||||||||||||||||  ||||| |||||||| ||||    
T  10059065 gcctagtggttgacttgagatcttggagtttgctcctctcaaagtctcaggtttaattc 10059123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 37351635 - 37351589
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||||| |||||||||||||||||||| || ||||||| ||||||    
T  37351635 cttgggatcttggagtttgctcctccaaatgtctcaggttcgattcc 37351589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 7578419 - 7578480
Alignment:
Q  351 gcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||||||  |||||||| |||||||||| ||||||| | || ||||||| ||||||||    
T  7578419 gcctagtggttggcttgggatcttggagtttgttcctccagaggtctcaggttcgattccct 7578480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 33905684 - 33905635
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  33905684 cttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 33905635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 36156061 - 36156013
Alignment:
Q  365 ttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  36156061 ttgggatcttggagtttgctcctccagaggtgtcaggttcgattccctc 36156013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 47091687 - 47091735
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcc 386  Q
    |||||||| |||||||||||||||  |||| ||| ||||||||||||||    
T  47091687 ccatttggggttggcctagtggttggcttgagatcttggagtttgctcc 47091735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 8484864 - 8484786
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || |||||||||||||||||    
T  8484864 aatccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctc 8484786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 27487760 - 27487686
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgat 407  Q
    ||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||| | || |||||||||||    
T  27487760 gaaatccatttggggttggcctagtggttgatttgggattttggagtttgctcttccagaggtctcaggtttgat 27487686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 25750815 - 25750759
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctcca 390  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||    
T  25750815 aaatccatttggggttggcctagtggttgacttgggatcttggagtttgctcctcca 25750759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 32059640 - 32059568
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| || ||||||| ||||||    
T  32059640 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattcc 32059568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 15931056 - 15931131
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||| |||||||| |||||||||||| || || |||| ||||||| |||||||||    
T  15931056 ccatttggggttggcctagtggttagcttgggatcttggagtttgcttcttcacaagtctcaggttcgattccctc 15931131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 22392698 - 22392773
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  22392698 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 22392773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 38631164 - 38631086
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || |||| || |||||||||    
T  38631164 aatccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcagattcgattccctc 38631086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 413
Target Start/End: Original strand, 38684198 - 38684280
Alignment:
Q  331 tggaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| ||| |||| ||||||| ||||||| ||||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  38684198 tggaaacccacttggggttggcccagtggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 38684280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 4603771 - 4603828
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaa 392  Q
    ||||||||||| |||||||||||||||  |||||||| ||||||||||||||||||||    
T  4603771 aatccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaa 4603828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 409
Target Start/End: Original strand, 10399766 - 10399841
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||||||| ||||| ||||||||| |||| |||| |||||||||||| || ||||  |||||||||||||||    
T  10399766 aaatccatttggtgttggtctagtggttgactttggatcttggagtttgcttcttcaaagatttcaggtttgattc 10399841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 11926702 - 11926627
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||   ||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  11926702 ccatttggggttggcctagtggttggtttgggatcttggagtttgctcctccagaggtctcaggttagattccctc 11926627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 13038654 - 13038579
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||   ||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  13038654 ccatttggggttggcctagtggttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 13038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 13108649 - 13108574
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| |  | ||||||| |||||||||    
T  13108649 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagagatctcaggttcgattccctc 13108574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 15641305 - 15641230
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||| |||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  15641305 ccatttggggttagcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 15641230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 25586929 - 25587004
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||| ||||    
T  25586929 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctc 25587004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 36954815 - 36954890
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||| | | || ||||||| |||||||||    
T  36954815 ccatttggggttggcctagtggttgccttgggatcttggagtttgctcctctagaggtctcaggttcgattccctc 36954890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 31288146 - 31288072
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||| | |||||||||||||||  |||||||| |||||||||||||||||||| || ||| ||| ||||||||    
T  31288146 ccattttgggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcatgttcgattccct 31288072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 5067298 - 5067350
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctcca 390  Q
    |||||||||||||| ||||||||| ||||||||| || |||||||||||||||    
T  5067298 ccatttggagttggtctagtggttgacttgggatcttcgagtttgctcctcca 5067350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 930687 - 930612
Alignment:
Q  336 atccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccc 411  Q
    |||||||||| ||||||| |||||||  |||| |||||| |||||||||||||  ||||| ||||||| |||||||    
T  930687 atccatttggggttggcccagtggttggcttgagattttagagtttgctcctctcaaagtctcaggttcgattccc 930612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 1827730 - 1827655
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||| ||||||||||  |||| ||| |||||||||||||||||| | || ||||||| |||||||||    
T  1827730 ccatttggggttgacctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctc 1827655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 19145611 - 19145536
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||||||| ||||||||| ||||||| ||||||||  || || || |||| |||||||||    
T  19145611 ccatttggggttggcctagtggttgacttgggatcttggagtatgctcctctcaaggtctccggttcgattccctc 19145536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 23270722 - 23270647
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||||| |||||| || ||| ||| |||| ||||    
T  23270722 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcatccaaaggtctcaagttcgatttcctc 23270647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 33709700 - 33709626
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||| ||| |||||||||    
T  33709700 ccatttgg-gttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaagttcgattccctc 33709626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 34310139 - 34310214
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||||||   ||||| || |||||||||||||||||| | || ||||||| |||||||||    
T  34310139 ccatttggggttggcctagtggtcggcttggaatcttggagtttgctcctccagaggtctcaggttcgattccctc 34310214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 411
Target Start/End: Original strand, 37397712 - 37397783
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccc 411  Q
    |||||| ||||| |||||||||  |||| ||| |||||||||||||||||||| || | |||||||||||||    
T  37397712 atttggggttggtctagtggttggcttgtgatcttggagtttgctcctccaaaggtctaaggtttgattccc 37397783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 12398622 - 12398574
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  12398622 cttgggatcttggagtttgctcctccaaaggtctcaggttcgattccct 12398574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 34049819 - 34049891
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||||| ||||| ||||| |||  |||||||| |||||||||||||||||| | || ||||||| ||||||    
T  34049819 ccatttggggttgggctagtagttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattcc 34049891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 3715107 - 3715052
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagt 395  Q
    |||||| |||||||||||||||   ||||||| |||||||||||||||||| ||||    
T  3715107 atttggggttggcctagtggttggtttgggatcttggagtttgctcctccagaagt 3715052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 10869756 - 10869693
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||| | |||||| ||||| ||| |||||||||||||||||||| || ||||||| ||||||    
T  10869756 gttggcatggtggttgacttgcgatcttggagtttgctcctccaaaggtctcaggttcgattcc 10869693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 27498931 - 27498856
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||| ||||||||||  ||||| || |||||||||||||||| | | || ||||||| |||||||||    
T  27498931 ccatttggggttgacctagtggttggcttggaatcttggagtttgctcctctagaggtctcaggttcgattccctc 27498856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 12317350 - 12317300
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    |||||||| |||||||||||||||  ||||| || ||||||||||||||||    
T  12317350 ccatttggggttggcctagtggttggcttggaatcttggagtttgctcctc 12317300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 15971313 - 15971247
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| ||||||||  |||||||| |||||||||||||||||| | || ||||||| |||| ||||    
T  15971313 gttggcttagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctc 15971247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 42193491 - 42193557
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||||| ||||||||| |||||||||||| | ||| | || ||||||| |||| ||||    
T  42193491 gttggcctagtggttgacttgggatcttggagtttgcttccccagaggtctcaggttcgatttcctc 42193557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 37495058 - 37495119
Alignment:
Q  352 cctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||  |||| ||| |||||||||||||||||| | || ||||||| |||||||||    
T  37495058 cctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctc 37495119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 204221 - 204177
Alignment:
Q  341 tttggagttggcctagtggttaacttgggattttggagtttgctc 385  Q
    ||||||||||| ||||||||| ||||| ||| |||||||||||||    
T  204221 tttggagttggtctagtggttgacttgtgatcttggagtttgctc 204177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Original strand, 18207231 - 18207279
Alignment:
Q  365 ttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  18207231 ttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 18207279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 5282 - 5207
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  5282 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctc 5207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 41844 - 41769
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  41844 ccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 41769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 3734823 - 3734748
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  3734823 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctc 3734748  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 19471610 - 19471685
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || |||||||||||||||||    
T  19471610 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctc 19471685  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 19542534 - 19542609
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || |||||||||||||||||    
T  19542534 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctc 19542609  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 19590162 - 19590087
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || |||||||||||||||||    
T  19590162 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctc 19590087  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 27746538 - 27746461
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    ||||||||||| |||||||||||||||   ||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  27746538 aatccatttggggttggcctagtggttggtttgggatcttggagtttgctcctccaaaggtctcaggttcgattccct 27746461  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 414
Target Start/End: Original strand, 18532108 - 18532184
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctca 414  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| ||||||||||    
T  18532108 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctca 18532184  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 34237855 - 34237780
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  34237855 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 34237780  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 42643318 - 42643243
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||| | || |||| || |||||||||    
T  42643318 ccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccagaggtctcagattcgattccctc 42643243  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 8042651 - 8042720
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtt 403  Q
    |||||||||||| |||| ||||||| ||  |||||||| ||||||||||||||||||||||| |||||||    
T  8042651 aaatccatttggggttgacctagtgcttggcttgggatcttggagtttgctcctccaaaagtctcaggtt 8042720  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 28193477 - 28193550
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  28193477 atttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 28193550  T

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Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 4718646 - 4718721
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||||||| || | || ||||||| |||||||||    
T  4718646 ccatttggggttggcctagtggttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattccctc 4718721  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 7558143 - 7558068
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||||||| |||| |||||||| |||||||||||||||||| |||| |||| || |||| ||||    
T  7558143 ccatttggggttggcctagtagttagcttgggatcttggagtttgctcctccagaagtctcagattcgatttcctc 7558068  T

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Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 39349257 - 39349332
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||||| |||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  39349257 ccatttggggttggcccagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 39349332  T

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Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 42328006 - 42328080
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| ||||||||| |||||||| | || |||||||||||||||||    
T  42328006 ccatttggggttggcctagtggttggcttgggatcttggagttt-ctcctccagaggtgtcaggtttgattccctc 42328080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 36848953 - 36848899
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    |||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||    
T  36848953 aaatccatttggggttggcatagtggttgacttgggtttttggagtttgctcctc 36848899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 2618187 - 2618239
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctcca 390  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||||||||||    
T  2618187 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctcca 2618239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 15259611 - 15259531
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||| ||||| |||||||||   ||||||| ||||| |||||||||||| | || ||||||| |||||||||    
T  15259611 gaaatccatttggggttggtctagtggttggtttgggatcttggattttgctcctccagaggtctcaggttcgattccctc 15259531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 20305909 - 20305981
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||||| |||||||||||||||  |||||||| || ||||||||||||||||| || |||| || ||||||    
T  20305909 ccatttggggttggcctagtggttggcttgggatcttagagtttgctcctccaaaggtctcagtttcgattcc 20305981  T

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Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 21092542 - 21092614
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||||| |||||||||||||||  |||||||| || ||||||||||||||||| || |||| || ||||||    
T  21092542 ccatttggggttggcctagtggttggcttgggatcttagagtttgctcctccaaaggtctcagtttcgattcc 21092614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 26169048 - 26168976
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||| | |||||||||||||||  |||||||| ||||||||||||||||  || || ||||||||||||||    
T  26169048 ccatttagggttggcctagtggtttgcttgggatcttggagtttgctcctctcaaggtctcaggtttgattcc 26168976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 264602 - 264524
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| |||||| |||||||||||||||  |||||||| || ||||||||||||||| |  | ||||||| |||||||||    
T  264602 aatcaatttggcgttggcctagtggttggcttgggatcttcgagtttgctcctccagagatctcaggttcgattccctc 264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 413
Target Start/End: Original strand, 651319 - 651397
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| |||||| |||||||||||||||  |||||||| || ||||||||||||||| |  | ||||||| |||||||||    
T  651319 aatcaatttggcgttggcctagtggttggcttgggatcttcgagtttgctcctccagagatctcaggttcgattccctc 651397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 413
Target Start/End: Original strand, 837054 - 837132
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| |||||| |||||||||||||||  |||||||| || ||||||||||||||| |  | ||||||| |||||||||    
T  837054 aatcaatttggcgttggcctagtggttggcttgggatcttcgagtttgctcctccagagatctcaggttcgattccctc 837132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 34694780 - 34694726
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    |||||||||||| ||||| ||||||||| ||||| ||| ||||||||||||||||    
T  34694780 aaatccatttggggttggtctagtggttgacttgtgatcttggagtttgctcctc 34694726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 24018385 - 24018458
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| ||||  ||||||||| ||||||||| |||||||||||||||||||| || | ||||| |||| ||||    
T  24018385 atttggggttgatctagtggttgacttgggatcttggagtttgctcctccaaaggtctgaggttcgatttcctc 24018458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 21603241 - 21603305
Alignment:
Q  348 ttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    ||||||||||||||  |||||||| || ||||||||||||||| | || ||||||| ||||||||    
T  21603241 ttggcctagtggttggcttgggatcttagagtttgctcctccagaggtctcaggttcgattccct 21603305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 28908818 - 28908872
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    |||| ||||||||||||| |||||||||   |||| |||||||||||||||||||    
T  28908818 aaattcatttggagttggtctagtggttggtttggaattttggagtttgctcctc 28908872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 14632981 - 14633030
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  14632981 cttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 14633030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 20469944 - 20469993
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  20469944 cttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 20469993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 408
Target Start/End: Original strand, 21667548 - 21667621
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgatt 408  Q
    ||||||||||  ||||| |||||||||  ||||| || |||||| |||||||||||||  ||||||||| ||||    
T  21667548 aatccatttgaggttggtctagtggttggcttggaatcttggaggttgctcctccaaagatttcaggttcgatt 21667621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Original strand, 2166727 - 2166775
Alignment:
Q  365 ttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||| ||||||| || ||||||| |||||||||    
T  2166727 ttgggatcttggagtttgcttctccaaaggtctcaggttcgattccctc 2166775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 9047443 - 9047403
Alignment:
Q  373 ttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||||||||||||||| |||| | |||||||||||||    
T  9047443 ttggagtttgctcctccaaaggttttaagtttgattccctc 9047403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 2751272 - 2751347
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  2751272 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctc 2751347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 7275268 - 7275353
Alignment:
Q  328 acttggaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| |||| |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  7275268 actttgaaacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 7275353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 2103056 - 2103131
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  2103056 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 2103131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 7176062 - 7175987
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  7176062 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 7175987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 21218033 - 21217958
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  21218033 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 21217958  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 32849592 - 32849667
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||| ||||||||||| ||||||||| |||||||||||||||||| | || || ||||||||||||||    
T  32849592 ccatttggggttagcctagtggttgacttgggatcttggagtttgctcctccagaggtctcgggtttgattccctc 32849667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 40543110 - 40543035
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  40543110 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 40543035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 22119890 - 22119964
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  22119890 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 22119964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 27312155 - 27312228
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| |||||||||||||||  |||||||| |||||||||||||||| | | |||||||||| |||||||||    
T  27312155 atttggggttggcctagtggttggcttgggatcttggagtttgctcctctagaggtttcaggttcgattccctc 27312228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 42814867 - 42814940
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||||||   |||| ||||||| |||||||||    
T  42814867 atttggagttggcttagtggttgacttgggatcttggagtttgctcctcttgaagtctcaggttcgattccctc 42814940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 23854392 - 23854468
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||| |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||    
T  23854392 gaaacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 23854468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 7800032 - 7799957
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||| ||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  7800032 ccatttggggttgacctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 7799957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 9718191 - 9718112
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||||||  |||||||||||||||  | || ||| ||||||||||||||||||||||| ||| ||| |||||||||    
T  9718191 aaatccatttgaggttggcctagtggttggcctgagatattggagtttgctcctccaaaagtctcaagttcgattccctc 9718112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 10091189 - 10091264
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| ||||| |||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  10091189 ccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 10091264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 18044108 - 18044183
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | ||  |||||| |||||||||    
T  18044108 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtcccaggttcgattccctc 18044183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 28089813 - 28089892
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||||||| |||||||||||||||  |||| ||| |||||||||||||||||| | || ||||||| ||| |||||    
T  28089813 aaatccatttggggttggcctagtggttggcttgagatcttggagtttgctcctccagatgtctcaggttcgataccctc 28089892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 2344300 - 2344354
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaa 392  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||||||||||||    
T  2344300 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaa 2344354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 31197592 - 31197663
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||| ||||| |||||||||  |||||||| ||||||||||||| |||| | || |||||||||||||    
T  31197592 ccatttggggttggtctagtggttggcttgggatcttggagtttgctcatccagatgtctcaggtttgattc 31197663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 13332622 - 13332572
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctcc 389  Q
    ||||||| |||||||||||||||  |||||||| |||||||||||||||||    
T  13332622 catttggggttggcctagtggttggcttgggatcttggagtttgctcctcc 13332572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 403
Target Start/End: Original strand, 17212049 - 17212119
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtt 403  Q
    |||| |||||||| |||||| ||||||||  |||||||| |||||||||||||||||| | || |||||||    
T  17212049 gaaacccatttggggttggcttagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtt 17212119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 413
Target Start/End: Original strand, 21835149 - 21835227
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||| | |||| ||||||||||  |||||||| |||||||||||||||||| |  | ||||||| |||||||||    
T  21835149 aatccatttagggttgacctagtggttggcttgggatcttggagtttgctcctccagagatctcaggttcgattccctc 21835227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 22696330 - 22696396
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||  || || |||||||||||||||||    
T  22696330 gttggcctagtggttgatttgggatcttggagtgtgctcctctcaaggtctcaggtttgattccctc 22696396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 413
Target Start/End: Original strand, 36173033 - 36173111
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||| ||||||||  || || |||||||||||||||||||| || ||  || |||||||||| |||||||||    
T  36173033 aatccatttggggttggccttatgattgacttgggattttggagtttgttcatctcaaggtttcaggttcgattccctc 36173111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 8435895 - 8435846
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcct 387  Q
    |||||||| ||||| ||||||||| ||||||||| |||||||||||||||    
T  8435895 ccatttggggttggtctagtggttgacttgggatcttggagtttgctcct 8435846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 39145852 - 39145800
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctcca 390  Q
    |||||||  |||| |||||||||| ||||||||| ||||||||||||||||||    
T  39145852 ccatttgaggttgacctagtggttgacttgggatcttggagtttgctcctcca 39145800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 11997850 - 11997925
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||  ||||| |||||||||  |||||||| |||||||||||||||| | | || ||||||| |||||||||    
T  11997850 ccatttgtggttgggctagtggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattccctc 11997925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 21370598 - 21370673
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||   ||||||| ||||||||| ||||| || | || ||||||| |||||||||    
T  21370598 ccatttggggttggcctagtggttggtttgggatcttggagtttactccttcagatgtctcaggttcgattccctc 21370673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 22703503 - 22703562
Alignment:
Q  354 tagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  22703503 tagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 22703562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 25333420 - 25333495
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||| ||||||||  |||||||| |||||||||||| ||||| | || ||||||| ||| |||||    
T  25333420 ccatttggggttggcttagtggttggcttgggatcttggagtttgcttctccagaggtctcaggttcgataccctc 25333495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 27009360 - 27009435
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  ||| |||| ||||||||||||| |||| | || ||||||| ||| |||||    
T  27009360 ccatttggggttggcctagtggttggcttcggatcttggagtttgctcatccagaggtctcaggttcgatcccctc 27009435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 406
Target Start/End: Original strand, 28003838 - 28003905
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttga 406  Q
    ||||||| ||||  |||||||||  |||||||| |||||||||||||||||| |||| | ||||||||    
T  28003838 catttggggttgatctagtggttggcttgggatcttggagtttgctcctccagaagtcttaggtttga 28003905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 31713095 - 31713020
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||   ||||||| |||||||||||||||| | | || ||||| |||||| ||||    
T  31713095 ccatttggggttggcctagtggttggtttgggatcttggagtttgctcctcgagaggtctcaggattgatttcctc 31713020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 40332100 - 40332175
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||||||||| |||||||||  ||||  || |||||||||||||||| ||| || ||||||| |||| ||||    
T  40332100 ccatttggagttggtctagtggttggcttgaaatcttggagtttgctcctctaaaggtctcaggttcgatttcctc 40332175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 21574303 - 21574253
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    |||||||| |||||||||||||||   ||||||||||||||| ||||||||    
T  21574303 ccatttggggttggcctagtggttggtttgggattttggagtgtgctcctc 21574253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 22299863 - 22299925
Alignment:
Q  351 gcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||||||  |||||||| |||||||||||||||||| | || ||| ||| |||||||||    
T  22299863 gcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaagttcgattccctc 22299925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 23012699 - 23012633
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||  |||||||| |||||||||||| ||||| | || | |||||||||||||||    
T  23012699 gttggcccagtggttggcttgggatcttggagtttgcttctccagaggtcttaggtttgattccctc 23012633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 9683824 - 9683877
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    ||||||||||  ||||||||||||||| ||||| ||| | ||||||||||||||    
T  9683824 aatccatttgcggttggcctagtggttgacttgagatctgggagtttgctcctc 9683877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 28646972 - 28647045
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| |||||||||||| || ||||||||| ||||||| |||| |||  || || ||||||| |||||||||    
T  28646972 atttggggttggcctagtgattgacttgggatcttggagtgtgcttctctcaaggtctcaggttcgattccctc 28647045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 42913704 - 42913663
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    |||||||||||||||  |||||||| ||||||||||||||||    
T  42913704 gttggcctagtggttggcttgggatcttggagtttgctcctc 42913663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 19660732 - 19660661
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||| | || |||||||||||||    
T  19660732 ccatttggagttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattc 19660661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 25852211 - 25852286
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  25852211 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctc 25852286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 13873495 - 13873420
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||||||| |||| || ||||||| |||||||||    
T  13873495 ccatttggggttggcctagtggtttgcttgggatcttggagtttgctccttcaaaggtctcaggttcgattccctc 13873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 54127542 - 54127467
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| || |||||||  ||||||||    
T  54127542 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcaattccctc 54127467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 51535619 - 51535685
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  51535619 gttggcctagtggttgacttgggatcttggagtttgctcctccacaggtctcaggttcgattccctc 51535685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 413
Target Start/End: Original strand, 32986189 - 32986269
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || |||||||  ||||||||    
T  32986189 gaaacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctc 32986269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 1985828 - 1985907
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||| ||||||||  ||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| ||||||||    
T  1985828 gaaacccatttgggattggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccct 1985907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 13584458 - 13584379
Alignment:
Q  334 aaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||||||  |||||||||||||||  | || ||| ||||||||||||||||||||||| ||| ||| |||||||||    
T  13584458 aaatccatttgaggttggcctagtggttggcctgagatattggagtttgctcctccaaaagtctcaagttcgattccctc 13584379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 20566343 - 20566398
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctcca 390  Q
    ||||||||||| |||||||||||||||  |||||||| ||||||||||||||||||    
T  20566343 aatccatttggggttggcctagtggttggcttgggatcttggagtttgctcctcca 20566398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 52983616 - 52983691
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||| ||| |||||||||||||||||| | || ||||||| |||||||||    
T  52983616 ccatttggggttggcctagtggttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctc 52983691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 42245744 - 42245818
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| ||||||||||||||| ||||||||| || ||||||||||||| ||| || || |||| |||||||||    
T  42245744 catttggggttggcctagtggttgacttgggatcttagagtttgctcctctaaaggtctcgggttcgattccctc 42245818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 46714389 - 46714459
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgatt 408  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| ||||    
T  46714389 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 46714459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 35674946 - 35674866
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| |||||||| ||||||| |||||||  |||||||| ||||||||||||| |||||| ||  |||||| |||||||||    
T  35674946 gaaacccatttggggttggccaagtggttggcttgggatcttggagtttgctcttccaaaggtcacaggttcgattccctc 35674866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 22625270 - 22625195
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||  |||||||||||||||  |||||||| ||||||||| |||||||| | || ||||||| |||||||||    
T  22625270 ccatttgaggttggcctagtggttggcttgggatcttggagtttactcctccagaggtctcaggttcgattccctc 22625195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 27528995 - 27528920
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||| ||| |||||| ||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  27528995 ccatctggggttggcttagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 27528920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 33696479 - 33696404
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| | |||||||||||||||  |||||||| |||||||||||||||||| | || |||||||  ||||||||    
T  33696479 ccatttagggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctc 33696404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 34844958 - 34844887
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||| |||||||||||||||  |||| ||| |||||||||||||||||| | || ||||||| |||||    
T  34844958 ccatttggggttggcctagtggtttgcttgagatcttggagtttgctcctccagaggtctcaggttcgattc 34844887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 35229174 - 35229237
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| ||||||    
T  35229174 gttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattcc 35229237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 40059052 - 40058981
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||| | | || ||||||| |||||    
T  40059052 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattc 40058981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 36131710 - 36131636
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||| |||||| ||||||||  ||||||||||||||||| | ||||||| | || ||||||| ||||||||    
T  36131710 ccatttggggttggcatagtggtttgcttgggattttggagttcgttcctccagatgtctcaggttcgattccct 36131636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 7392137 - 7392089
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccct 412  Q
    |||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  7392137 cttgggatcttggagtttgctcctccaaaggtctcaggttcgattccct 7392089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 10125783 - 10125823
Alignment:
Q  342 ttggagttggcctagtggttaacttgggattttggagtttg 382  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  10125783 ttggagttggcctagtggttgacttgggatcttggagtttg 10125823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 12500231 - 12500183
Alignment:
Q  365 ttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| ||||||||||||||| |||| || |||||||||||||||||    
T  12500231 ttgggatcttggagtttgctccttcaaaggtctcaggtttgattccctc 12500183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 5609402 - 5609355
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctc 385  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||    
T  5609402 ccatttggggttggcctagtggttggcttgggatcttggagtttgctc 5609355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 20078158 - 20078111
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccc 411  Q
    |||||||| |||||||||||||||||| | || |||||||||||||||    
T  20078158 cttgggatcttggagtttgctcctccagaggtctcaggtttgattccc 20078111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 34722169 - 34722219
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctcca 390  Q
    |||||| |||||| ||||||||  |||||||| ||||||||||||||||||    
T  34722169 atttggggttggcttagtggttggcttgggatcttggagtttgctcctcca 34722219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 43719264 - 43719194
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattc 409  Q
    ||||||| ||||| |||||||||   ||| ||| |||||||||||||||||| | |||||||||| |||||    
T  43719264 catttggggttggtctagtggttggtttgagatcttggagtttgctcctccagaggtttcaggttcgattc 43719194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 55961932 - 55961890
Alignment:
Q  348 ttggcctagtggttaacttgggattttggagtttgctcctcca 390  Q
    ||||||||||||||  |||||||| ||||||||||||||||||    
T  55961932 ttggcctagtggttggcttgggatcttggagtttgctcctcca 55961890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 2351020 - 2351085
Alignment:
Q  348 ttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||||||||  ||||| || ||| |||||||||||||| | || ||||||| |||||||||    
T  2351020 ttggcctagtggttggcttggaatcttgaagtttgctcctccagaggtctcaggttcgattccctc 2351085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 13550202 - 13550255
Alignment:
Q  335 aatccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    ||||||||||  ||||||||||||||| ||||| ||| | ||||||||||||||    
T  13550202 aatccatttgcggttggcctagtggttgacttgagatctgggagtttgctcctc 13550255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 97566 - 97491
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  |||||||| ||| |||||||||||||||| || ||||||| |||||||||    
T  97566 ccatttggggttggcctagtggttggcttgggatcttgtagtttgctcctccaaaggtctcaggttcgattccctc 97491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 1255 - 1181
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  1255 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 1181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 9498 - 9424
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  9498 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 9424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 12199 - 12125
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||| ||||    
T  12199 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctc 12125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 53071 - 52996
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||||  ||||||||||||||  |||||||| |||||||||||||||||| | | |||||||| |||||||||    
T  53071 ccatttgggattggcctagtggttggcttgggatcttggagtttgctcctccagaggcttcaggttcgattccctc 52996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 10892 - 10818
Alignment:
Q  339 catttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| |||| ||||    
T  10892 catttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctc 10818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 8607 - 8537
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgatt 408  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||||||||| | || ||||||| ||||    
T  8607 ccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 8537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 14988 - 15063
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  | |||||| |||||||||||||||||| | || |||||||  ||||||||    
T  14988 ccatttggggttggcctagtggttggcctgggatcttggagtttgctcctccagaggtctcaggttcaattccctc 15063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 40322 - 40397
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||  ||| |||| ||||||||||||||| || | || ||||||| |||||||||    
T  40322 ccatttggggttggcctagtggttggcttaggatcttggagtttgctccttcagaggtctcaggttcgattccctc 40397  T

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Target: scaffold0217 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 7507 - 7434
Alignment:
Q  340 atttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||| ||||||||||| |||  |||||||| |||||||||||||||||| |  | ||||||| |||||||||    
T  7507 atttggggttggcctagtagttggcttgggatcttggagtttgctcctccagagatctcaggttcgattccctc 7434  T

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Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 66754 - 66831
Alignment:
Q  333 gaaatccatttggagttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattcc 410  Q
    |||| ||||||||  |||| |||||||||  |||||||| |||||||||||||||||||| || ||| ||| ||||||    
T  66754 gaaacccatttgggattggtctagtggttggcttgggatcttggagtttgctcctccaaaggtctcacgttcgattcc 66831  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 413
Target Start/End: Original strand, 20246 - 20294
Alignment:
Q  365 ttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    ||||||| ||||||||||||||| |||| || |||||||||||||||||    
T  20246 ttgggatcttggagtttgctccttcaaaggtctcaggtttgattccctc 20294  T

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Target: scaffold0717 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 149 - 83
Alignment:
Q  347 gttggcctagtggttaacttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||||||||||  |||| ||| ||||||||||||| |||| | || ||||||| |||||||||    
T  149 gttggcctagtggttggcttgtgatcttggagtttgctcgtccagaggtctcaggttcgattccctc 83  T

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Target: scaffold0240 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 12944 - 12902
Alignment:
Q  348 ttggcctagtggttaacttgggattttggagtttgctcctcca 390  Q
    |||||||||||||| ||||||||| |||||||| |||||||||    
T  12944 ttggcctagtggttgacttgggatcttggagttcgctcctcca 12902  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 27773 - 27823
Alignment:
Q  338 ccatttggagttggcctagtggttaacttgggattttggagtttgctcctc 388  Q
    |||||||| ||||| |||||||||   ||||||||||||||||||||||||    
T  27773 ccatttggggttggtctagtggttggtttgggattttggagtttgctcctc 27823  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 161832 - 161881
Alignment:
Q  364 cttgggattttggagtttgctcctccaaaagtttcaggtttgattccctc 413  Q
    |||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  161832 cttgggatcttggagtttgctcctccagaggtctcaggttcgattccctc 161881  T

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