View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_35 (Length: 434)

Name: NF16904_low_35
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_35
NF16904_low_35
[»] chr8 (1 HSPs)
chr8 (31-416)||(18306587-18306966)
[»] chr3 (6 HSPs)
chr3 (1-187)||(41753347-41753522)
chr3 (1-71)||(41750128-41750198)
chr3 (234-350)||(41753179-41753294)
chr3 (281-330)||(41748661-41748710)
chr3 (1-68)||(41744679-41744746)
chr3 (365-414)||(33807165-33807214)
[»] chr1 (2 HSPs)
chr1 (1-68)||(29589981-29590048)
chr1 (360-410)||(46601408-46601458)
[»] chr6 (2 HSPs)
chr6 (354-413)||(7052411-7052469)
chr6 (365-414)||(3608071-3608120)
[»] chr7 (2 HSPs)
chr7 (365-414)||(728032-728081)
chr7 (365-414)||(39218884-39218933)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 31 - 416
Target Start/End: Complemental strand, 18306966 - 18306587
Alignment:
Q  31 gaaattgagaagctgaggcaagcatgtttcaaagctaaatagtgtaagagaagattaattaattaccctcaatccttgaatgaacgttcaacctcttttg 130  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||     |||||||||||||||    
T  18306966 gaaatcgagaagctgaggcaagaatgttttaaagctaaatagtgtaagagaagattaattaattacccttaatccttgaa-----gttcaacctcttttg 18306872  T
Q  131 cttgaaatgaatgtaaagaaaagcctcacacatcgtatagtgaaaaggactcattgatatgttactacttgattttaatgnnnnnnnnnnnnnnnnnnnn 230  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||                        
T  18306871 cttgaaatgaatgtaaagaaaagactcacacatcgtatagtgaagaggactcattgctatgttactacttgattttaatgttttttttcttcttcttctt 18306772  T
Q  231 nnatgattgggatcaaattgagtagtagatacttttaaa-ctatattttagtaggagactaatttgagtgaagcaaatgtattttgagaagtttatgagt 329  Q
      ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18306771 --atgattgggatcaaattgagtagtagatacttttaaaactatattttagtaggagactaatttgagtgaagcaagtgtattttgagaagtttatgagt 18306674  T
Q  330 aagaattcattttgtcacttttagtaaaattcttgaagacatttttaaataaatattttcctttaaaatcctaattgaatacaccaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  18306673 aagaattcattttgtcacttttagtaaaattcttgaagacatttttaaacaaatattgtcctttaaaatcctaattgaatacaccaa 18306587  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 41753522 - 41753347
Alignment:
Q  1 gagaaacttcctgaaatggaattgaatgaagaaattgagaagctgaggcaagcatgtttcaaagctaaatagtgtaagagaagattaattaattaccctc 100  Q
    |||||||||||||||||||||||||||||||| ||  | |||||||||||||||||||| | |||||| ||  | ||||||||||||||||    |||||    
T  41753522 gagaaacttcctgaaatggaattgaatgaagagatcaaaaagctgaggcaagcatgttttagagctaagtatagcaagagaagattaatta----ccctc 41753427  T
Q  101 aatccttgaatgaacgttcaacctcttttgcttgaaatgaatgtaaagaaaagcctcacacatcgtatagtgaaaaggactcattga 187  Q
    ||||||||||      ||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||  |||||||||||||    
T  41753426 aatccttgaac-----ttctacctcttttgcttgaaatgaatgtaaaaaaaagcctcacacagagtatagtg--aaggactcattga 41753347  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41750198 - 41750128
Alignment:
Q  1 gagaaacttcctgaaatggaattgaatgaagaaattgagaagctgaggcaagcatgtttcaaagctaaata 71  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||| | |||||| | |||||||||||    
T  41750198 gagaaacttcctgaaatggaattgaacgaagaaatcaagaagctgaggaatgcatgtattaaagctaaata 41750128  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 350
Target Start/End: Complemental strand, 41753294 - 41753179
Alignment:
Q  234 tgattgggatcaaattgagtagtagatacttttaaactatatttt--agtaggagactaatttgagtgaagcaaatgtattttgagaagtttatgagtaa 331  Q
    ||||| ||||||||||||||||||||||| ||  | |||||| ||  | |||| ||||||||||| ||||||| |||||||||||| ||||  ||||||     
T  41753294 tgattaggatcaaattgagtagtagataccttagagctatatattctattagg-gactaatttgactgaagcacatgtattttgaggagtt--tgagtag 41753198  T
Q  332 gaattcattttgtcacttt 350  Q
    |||| ||||||||||||||    
T  41753197 gaatccattttgtcacttt 41753179  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 41748710 - 41748661
Alignment:
Q  281 taggagactaatttgagtgaagcaaatgtattttgagaagtttatgagta 330  Q
    ||||| |||||||||| ||||||| |||||||||||| ||||||||||||    
T  41748710 taggaaactaatttgactgaagcacatgtattttgaggagtttatgagta 41748661  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41744746 - 41744679
Alignment:
Q  1 gagaaacttcctgaaatggaattgaatgaagaaattgagaagctgaggcaagcatgtttcaaagctaa 68  Q
    ||||||||||| | |||| | |||||||| |||||  ||||||||||||||||||| || ||||||||    
T  41744746 gagaaacttccgggaatgcatttgaatgatgaaatcaagaagctgaggcaagcatgctttaaagctaa 41744679  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 33807214 - 33807165
Alignment:
Q  365 aagacatttttaaataaatattttcctttaaaatcctaattgaatacacc 414  Q
    ||||| |||||||||||| ||| |||||||||||||||||  ||||||||    
T  33807214 aagacttttttaaataaaaattgtcctttaaaatcctaatccaatacacc 33807165  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29589981 - 29590048
Alignment:
Q  1 gagaaacttcctgaaatggaattgaatgaagaaattgagaagctgaggcaagcatgtttcaaagctaa 68  Q
    ||||||||||| | |||||| |||||||| |||||  ||||||||||||||||||| || ||||||||    
T  29589981 gagaaacttccgggaatggatttgaatgacgaaatcaagaagctgaggcaagcatgctttaaagctaa 29590048  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 46601458 - 46601408
Alignment:
Q  360 tcttgaagacatttttaaataaatattttcctttaaaatcctaattgaata 410  Q
    |||| ||||| |||||||||||| ||| || ||||||||||||||||||||    
T  46601458 tcttcaagacttttttaaataaaaattgtcttttaaaatcctaattgaata 46601408  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 7052411 - 7052469
Alignment:
Q  354 taaaattcttgaagacatttttaaataaatattttcctttaaaatcctaattgaatacac 413  Q
    |||||||||| ||||| |||||||| ||| ||| |||||||||||||||||| |||||||    
T  7052411 taaaattctt-aagacttttttaaacaaaaattgtcctttaaaatcctaattcaatacac 7052469  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 3608071 - 3608120
Alignment:
Q  365 aagacatttttaaataaatattttcctttaaaatcctaattgaatacacc 414  Q
    ||||| |||||||| ||| ||| |||||||||||||||||| ||||||||    
T  3608071 aagacttttttaaacaaaaattatcctttaaaatcctaattcaatacacc 3608120  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 728032 - 728081
Alignment:
Q  365 aagacatttttaaataaatattttcctttaaaatcctaattgaatacacc 414  Q
    ||||| |||||||| ||| ||| |||||||||||||||||| ||||||||    
T  728032 aagacttttttaaacaaaaattctcctttaaaatcctaattcaatacacc 728081  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 39218933 - 39218884
Alignment:
Q  365 aagacatttttaaataaatattttcctttaaaatcctaattgaatacacc 414  Q
    ||||| |||||||| ||| ||| |||||||||||||||||| ||||||||    
T  39218933 aagacttttttaaacaaaaattgtcctttaaaatcctaattcaatacacc 39218884  T

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