View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_36 (Length: 431)

Name: NF16904_low_36
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_36
NF16904_low_36
[»] chr6 (11 HSPs)
chr6 (31-99)||(26890870-26890938)
chr6 (39-124)||(26641231-26641316)
chr6 (39-124)||(26747197-26747282)
chr6 (31-82)||(27651844-27651895)
chr6 (31-88)||(27713769-27713826)
chr6 (74-153)||(26966479-26966559)
chr6 (69-151)||(26631875-26631958)
chr6 (69-151)||(26737850-26737933)
chr6 (115-153)||(26651403-26651441)
chr6 (115-153)||(26757371-26757409)
chr6 (90-148)||(26854111-26854169)
[»] chr4 (3 HSPs)
chr4 (35-108)||(18682696-18682769)
chr4 (51-95)||(18692037-18692081)
chr4 (35-67)||(18650319-18650351)
[»] scaffold0349 (1 HSPs)
scaffold0349 (31-88)||(18118-18175)
[»] chr8 (1 HSPs)
chr8 (31-88)||(29269635-29269692)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 26890870 - 26890938
Alignment:
Q  31 taatttgcttttaagaatacaagagtttgtacatattgtgatactgacagatggttcatcacaatctct 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890870 taatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctct 26890938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 26641231 - 26641316
Alignment:
Q  39 ttttaagaatacaagagtttgtacatattgtgatactgacagatggttcatcacaatctctgttcaatgacgagagcttccatttc 124  Q
    ||||| ||||||||| |||| |||||| ||||||| |||||||||||||||||||||||| ||||||||| | || ||||||||||    
T  26641231 ttttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctcagttcaatgatgtgaacttccatttc 26641316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 26747197 - 26747282
Alignment:
Q  39 ttttaagaatacaagagtttgtacatattgtgatactgacagatggttcatcacaatctctgttcaatgacgagagcttccatttc 124  Q
    ||||| ||||||||| |||| |||||| ||||||| |||||||||||||||||||||||| ||||||||| | || ||||||||||    
T  26747197 ttttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctcagttcaatgatgtgaacttccatttc 26747282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 27651895 - 27651844
Alignment:
Q  31 taatttgcttttaagaatacaagagtttgtacatattgtgatactgacagat 82  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  27651895 taatttgcttttacgaatacaagagtttgtacatattgcgatactgacagat 27651844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 27713826 - 27713769
Alignment:
Q  31 taatttgcttttaagaatacaagagtttgtacatattgtgatactgacagatggttca 88  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||    
T  27713826 taatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 27713769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 26966479 - 26966559
Alignment:
Q  74 ctgacagatggttcatcacaa-tctctgttcaatgacgagagcttccatttctccaatgaagtgtttgattattaattaca 153  Q
    ||||||||||| ||||| ||| ||||| || ||||| | || |||||||||||| |||  |||||||||||||||||||||    
T  26966479 ctgacagatggctcatctcaaatctctatttaatgatgtgaacttccatttctcaaatatagtgtttgattattaattaca 26966559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 26631875 - 26631958
Alignment:
Q  69 tgatactgacagatggttcatcacaa-tctctgttcaatgacgagagcttccatttctccaatgaagtgtttgattattaatta 151  Q
    |||| ||||||||||||| ||  ||| ||||| |||||||| |  | |||||||||||| ||| ||||||||||||||||||||    
T  26631875 tgattctgacagatggttaatgtcaaatctctattcaatgatgttaacttccatttctcaaataaagtgtttgattattaatta 26631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 26737850 - 26737933
Alignment:
Q  69 tgatactgacagatggttcatcacaa-tctctgttcaatgacgagagcttccatttctccaatgaagtgtttgattattaatta 151  Q
    |||| ||||||||||||| ||  ||| ||||| |||||||| |  | |||||||||||| ||| ||||||||||||||||||||    
T  26737850 tgattctgacagatggttaatgtcaaatctctattcaatgatgttaacttccatttctcaaataaagtgtttgattattaatta 26737933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 26651403 - 26651441
Alignment:
Q  115 cttccatttctccaatgaagtgtttgattattaattaca 153  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  26651403 cttccatttctcaaataaagtgtttgattattaattaca 26651441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 26757371 - 26757409
Alignment:
Q  115 cttccatttctccaatgaagtgtttgattattaattaca 153  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  26757371 cttccatttctcaaataaagtgtttgattattaattaca 26757409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 26854111 - 26854169
Alignment:
Q  90 cacaatctctgttcaatgacgagagcttccatttctccaatgaagtgtttgattattaa 148  Q
    ||||||||||||||||||||| ||  ||||||||||| ||| ||||| || ||||||||    
T  26854111 cacaatctctgttcaatgacgtgatattccatttctcaaataaagtgattaattattaa 26854169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 18682769 - 18682696
Alignment:
Q  35 ttgcttttaagaatacaagagtttgtacatattgtgatactgacagatggttcatcacaatctctgttcaatga 108  Q
    |||||||||||||||||||||| |||||||||| | |||| || ||||||||| ||||||||||||| ||||||    
T  18682769 ttgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaatctctgtacaatga 18682696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 18692081 - 18692037
Alignment:
Q  51 aagagtttgtacatattgtgatactgacagatggttcatcacaat 95  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  18692081 aagagtttgtacatattttcataccgacagatggttcatcacaat 18692037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 18650351 - 18650319
Alignment:
Q  35 ttgcttttaagaatacaagagtttgtacatatt 67  Q
    |||||||||||||||||||||| ||||||||||    
T  18650351 ttgcttttaagaatacaagagtatgtacatatt 18650319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 18118 - 18175
Alignment:
Q  31 taatttgcttttaagaatacaagagtttgtacatattgtgatactgacagatggttca 88  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||    
T  18118 taatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 18175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 29269692 - 29269635
Alignment:
Q  31 taatttgcttttaagaatacaagagtttgtacatattgtgatactgacagatggttca 88  Q
    |||||||||||||| ||||||||||| |||| |||||||||||| ||| |||| ||||    
T  29269692 taatttgcttttaataatacaagagtatgtagatattgtgataccgactgatgtttca 29269635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University