View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_37 (Length: 415)
Name: NF16904_low_37
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 54621056 - 54620666
Alignment:
| Q |
11 |
cagagaatcaacaaaatcttcactatgaagcagacaggagcacctatgtcacaattataaatgcgttgaaaatgaaagatggctgcggtatttgttactt |
110 |
Q |
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| T |
54621056 |
cagagaatcaacaaaatcttcactatgaagcagacaggagcacctatgtcacaattataaatgcgttgaaaatgaaagatggctgcggtatttgttactt |
54620957 |
T |
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| Q |
111 |
gttagctccaacaaacaacnnnnnnnnncagtagttcctaattaaccgtcgataaaacaaaactttgaaattgagaagcttctttcatgcatattaagac |
210 |
Q |
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| T |
54620956 |
gttagctccaacaaacaacaaaaaaaa-cagtagttcctaattaaccgtcgataaaacaaaactttgaaattgagaagcttctttcatgcatattaagac |
54620858 |
T |
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| Q |
211 |
aagaacaataatctatctata-tttattagtattacatatgttaataatttaggaagatacataaaaaatggactagtatttatcatatttctagccaac |
309 |
Q |
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| T |
54620857 |
aagaacaataatctatctatattttattactattacatatgttaataatttaggaagatacataaaaaatggactagtatttatcatatctctagccaac |
54620758 |
T |
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| Q |
310 |
gttttgtc--nnnnnnnntatctctagccaacgtacaataaaaaattatttataatagttgaattcaaacactattaccatggattgagttc |
399 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54620757 |
gttttgtcaaaaaaaaaatatctctagccaacgtacaataaaaaataatttataatagttgaattcaaacactattaccatggattgagttc |
54620666 |
T |
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