View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_38 (Length: 401)
Name: NF16904_low_38
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 12030416 - 12030681
Alignment:
| Q |
18 |
caaacgaggtaattgcagcaacagttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaaatctgcaatgtcccaaaaccaatcatgta |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12030416 |
caaacgaggtaattgcagcaacggttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaaatctgcaatgtcccaaaactaatcatgta |
12030515 |
T |
|
| Q |
118 |
gggattataagaactactgcaatcagcttcatgtccttttctatggacacagacaatactctctattgctgccaggcttattgatgaagttattgtgtat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12030516 |
gggattataagaactactgcaatcagcttcatgtccttttctatggacacagacaatactctctattgctgccaggcttatggatgaagttattgtgtat |
12030615 |
T |
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| Q |
218 |
cccactgtgatcccagcaagttttccatacacaatcgatccacaaatcacttgcatcgttccacct |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12030616 |
cccactgtgatcccagcaagttttccatacacaatcgatccacaaatcacttgcatcgttccacct |
12030681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 222615 - 222762
Alignment:
| Q |
18 |
caaacgaggtaattgcagcaacagttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaaatctgcaatgtcccaaaaccaatcatgta |
117 |
Q |
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|||||||||| || || |||| ||||| |||||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || |
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| T |
222615 |
caaacgaggtgatagcggcaatggttgatatccatgtcagtttgtgaaagttgggaatttgagacaagaaaatctgcaatatcccaaaaccgatcatata |
222714 |
T |
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| Q |
118 |
gggattataagaactactgcaatcagcttcatgtccttttctatggac |
165 |
Q |
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| T |
222715 |
gggattataagaagtgctgcaatcagcttcaagtccttttctatggac |
222762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 242777 - 242630
Alignment:
| Q |
18 |
caaacgaggtaattgcagcaacagttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaaatctgcaatgtcccaaaaccaatcatgta |
117 |
Q |
| |
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|||||||||| || || |||| ||||| |||||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
242777 |
caaacgaggtgatagcggcaatggttgagatccatgtcagtttgtgaaagttgggaatttgagacaagaaaatctgcaatatcccaaaaccgatcatgta |
242678 |
T |
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| Q |
118 |
gggattataagaactactgcaatcagcttcatgtccttttctatggac |
165 |
Q |
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||||||| ||| ||| || |||||||||||| |||||||||||||||| |
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| T |
242677 |
gggattagaagtactgctacaatcagcttcaagtccttttctatggac |
242630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 223056 - 223139
Alignment:
| Q |
200 |
gatgaagttattgtgtatcccactgtgatcccagcaagttttccatacacaatcgatccacaaatcacttgcatcgttccacct |
283 |
Q |
| |
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||||||||||||||||| |||||||| |||||||| || |||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
223056 |
gatgaagttattgtgtagcccactgttatcccagctagctttccatacaaaatcaatccacaaattacttgcatcgttccacct |
223139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 242418 - 242335
Alignment:
| Q |
200 |
gatgaagttattgtgtatcccactgtgatcccagcaagttttccatacacaatcgatccacaaatcacttgcatcgttccacct |
283 |
Q |
| |
|
||||||||||||||||| || | ||| | ||||||||| ||||| |||| ||| |||||||| |||||||||| |||||||| |
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| T |
242418 |
gatgaagttattgtgtagcctattgttaccccagcaagctttccgtacaaaataattccacaaaacacttgcatctttccacct |
242335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 51529439 - 51529332
Alignment:
| Q |
18 |
caaacgaggtaattgcagcaacagttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaaatctgcaatgtcccaaaaccaatcatgta |
117 |
Q |
| |
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|||| |||||||| |||||||||||||| ||| |||| || | ||| || ||||| ||||||||||| |||||||| || |||||||||| | |||||| |
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| T |
51529439 |
caaaagaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatcccaaaaccgagcatgta |
51529340 |
T |
|
| Q |
118 |
gggattat |
125 |
Q |
| |
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|||||||| |
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|
| T |
51529339 |
gggattat |
51529332 |
T |
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