View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_39 (Length: 401)
Name: NF16904_low_39
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 8660796 - 8660423
Alignment:
| Q |
14 |
atcaatgaaatgagagataaaaacaacaatatgatcaaacaaactactacaagacacaagaagtgaaaaactataattaatttttgaactcctatgacat |
113 |
Q |
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| T |
8660796 |
atcaatgaaatgagagataaaaacaacaatatgatcaaacaaactactacaagacacaagaagtgaaaaactataattaatttttgaactactatgacat |
8660697 |
T |
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| Q |
114 |
ttttctggatcagcatgggaatactcatttgccaactagcaatgtcatagagcatctgtagctttctgaaattgttaaacaagacatacttttccctttc |
213 |
Q |
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| T |
8660696 |
ttttctggatcagcatgggaatactcatttgccaactagcaatgtcatagagcatctgtagctttctgaaattgttaaacaagacatacttttccctttc |
8660597 |
T |
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| Q |
214 |
taattaatgggtaatggacaataattatattattaattgcacaaacttgtgtaagataaaggtgaacaagagagatagaacatgctaacctggagcttgg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8660596 |
taattaatgggtaatggacaataattatattattaattgcacaaacttgtgtaagataaaggtgaacaagagagatagaacatgctaacctggagcttgg |
8660497 |
T |
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| Q |
314 |
aataaccaacacgccaccaaacaggttcaacaaagtgaaagactcgcaataggtctaataactcaggaatgaga |
387 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8660496 |
aataaccaacgcgccaccaaacaggttcaacaaagtgaaagactcccaataggtctaataactcaggaatgaga |
8660423 |
T |
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