View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_40 (Length: 401)
Name: NF16904_low_40
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 204 - 393
Target Start/End: Complemental strand, 31150626 - 31150437
Alignment:
| Q |
204 |
tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt |
303 |
Q |
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| T |
31150626 |
tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt |
31150527 |
T |
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| Q |
304 |
tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc |
393 |
Q |
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| T |
31150526 |
tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc |
31150437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 31150817 - 31150704
Alignment:
| Q |
18 |
atcttccttattgatgcacttacatgtgcaaattttaaagctttgctttgacacataaatttagtaattgatcacgacgtcctcgagaaactatattaat |
117 |
Q |
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| T |
31150817 |
atcttccttattgatgcacttacatgtgcaaattttaaagctttgctttgacacataaatttagtaattgatcacgacgtcctcgagaaactatattaat |
31150718 |
T |
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| Q |
118 |
taatcaaaagagag |
131 |
Q |
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| T |
31150717 |
taatcaaaagagag |
31150704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 391
Target Start/End: Complemental strand, 31161868 - 31161733
Alignment:
| Q |
256 |
agattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatt |
355 |
Q |
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| T |
31161868 |
agattgaaaagatcgtcgaagaaattatgaatatactgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaatt |
31161769 |
T |
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| Q |
356 |
agaaaaacatttacttttggactcgcttgatgatgt |
391 |
Q |
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| T |
31161768 |
agaaaaacatttacttttggattcggttgatgatgt |
31161733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 362
Target Start/End: Complemental strand, 31034207 - 31034102
Alignment:
| Q |
257 |
gattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatta |
356 |
Q |
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|||||||||||| ||||||||||| |||||| ||||||||| |||||| | |||||||||| ||||||| ||||| |||||| | || | |||||| |
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| T |
31034207 |
gattgaaaagattgttgaagagataataaatagattgggttaccggttttcaagtcttccaaaagatttagttgggattgattctcttatagaagaatta |
31034108 |
T |
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| Q |
357 |
gaaaaa |
362 |
Q |
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|||||| |
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| T |
31034107 |
gaaaaa |
31034102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 31159501 - 31159451
Alignment:
| Q |
230 |
taaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagat |
280 |
Q |
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| T |
31159501 |
taaaactttcaggcctcaatatgcagagattgaaaagattgttgaagagat |
31159451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 31476882 - 31476951
Alignment:
| Q |
322 |
atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgt |
391 |
Q |
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||||||| |||||| |||||||| ||| ||||||||||| | ||||||||||||||| |||||||||| |
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| T |
31476882 |
atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgt |
31476951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 31528639 - 31528549
Alignment:
| Q |
252 |
gcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctc |
342 |
Q |
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||||||||| ||||||| ||||||||||| |||||||| ||| || ||| ||||| | |||||||| ||||||| |||| |||||||| |
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| T |
31528639 |
gcagagattaaaaagattgttgaagagatagtaaatatattgaattgcaaattttcaagccttccaaatgatttagttgggacgcattctc |
31528549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 12781920 - 12781883
Alignment:
| Q |
25 |
ttattgatgcacttacatgtgcaaattttaaagctttg |
62 |
Q |
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| T |
12781920 |
ttattgatgcaattacttgtgcaaattttaaagctttg |
12781883 |
T |
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