View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_42 (Length: 382)
Name: NF16904_low_42
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 39272826 - 39272963
Alignment:
| Q |
1 |
acttcatggacttggtaattgtaggagttggaaggacaccaaccgcgatatatgatgttttgtttttccatttcctatatatatggaattgaaagtgccc |
100 |
Q |
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| T |
39272826 |
acttcatggacttggtaattgtaggagttggaaggacaccaaccgcgatatatgatgttttgtttttccatttcctatatatatggaattgaaagtgccc |
39272925 |
T |
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| Q |
101 |
agttctgtttgtgaatggtgttgaaattgtgttcctac |
138 |
Q |
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| T |
39272926 |
agttctgtttgtgaatggtgttgaaattgtgttcctac |
39272963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 39273006 - 39273099
Alignment:
| Q |
225 |
ttgagtatatatgtccattagttatatattctgtaatgatataaagtgattggataggatctaatacctctccctcctttttaccataaagttt |
318 |
Q |
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| T |
39273006 |
ttgagtatatatgtccattagttatatattctgtaatgatataaagtgattggataggatctaatacctctccctcctttttaccataaagttt |
39273099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 361
Target Start/End: Original strand, 39273098 - 39273129
Alignment:
| Q |
330 |
ttgaaataagatgaatatttgaggcatattat |
361 |
Q |
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| T |
39273098 |
ttgaaataagatgaatatttgaggcatattat |
39273129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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