View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16904_low_43 (Length: 373)
Name: NF16904_low_43
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_43 |
 | |
|
| [»] scaffold0466 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 25678151 - 25677799
Alignment:
| Q |
1 |
tttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25678151 |
tttcggtggacctccggtgcaatccaatatccggttttgctttccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcatgttggag |
25678052 |
T |
|
| Q |
101 |
cttcataaacaatgcccagaataatcgagaatagaatataaaataatgaacttgatttttgacaacttatctgctccccaatgtttccatacgtcttcta |
200 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25678051 |
cttcacaaacaatgcccaaaataattgagaatagaatataaaataatgaacttgatttttgacaacttatctgctccccaatgtttccatacgtcttcta |
25677952 |
T |
|
| Q |
201 |
tatatatggtgcaagtggccacataatggaagaatttcctcacattactgttgccacgttctcatatcacaatcaatggtatatattgatggccataaac |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||| |
|
|
| T |
25677951 |
tatatatggtgcaagtgaccacataatggaagaatttcctcacattaccgttgccacgttctcatatcacaatcaat-gaatatattgatggtcataaac |
25677853 |
T |
|
| Q |
301 |
acccaacggttggatactttgttttgcaacggtaggcaattaaaccaaatagtt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25677852 |
acccaacggttggatactttgttttgcaacggtaggcaattaaaccaaatagtt |
25677799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25391527 - 25391307
Alignment:
| Q |
1 |
tttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25391527 |
tttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcgaggccagcactttggag |
25391428 |
T |
|
| Q |
101 |
cttcataaacaatgcccagaataatcgagaatagaatataaaataatgaacttgatttttgacaacttatctgctccccaatgtttccatacgtcttcta |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25391427 |
cttcataaacaatgcccaaaataatcgagaatagaatataaaacaatgaacttgatttttgacaacttatctgctccccaatgtttccatacgtcttcta |
25391328 |
T |
|
| Q |
201 |
tatatatggtgcaagtggcca |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
25391327 |
tatatatggtgcaagtggcca |
25391307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 25358496 - 25358290
Alignment:
| Q |
1 |
tttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25358496 |
tttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcgagaccagcactttggag |
25358397 |
T |
|
| Q |
101 |
cttcataaacaatgcccagaataatcgagaatagaatataaaataatgaacttgatttttgacaacttatctgctccccaatgtttccatacgtcttcta |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25358396 |
cttcataaacaatgcccaaaataatcgagaatagaatataaaacaatgaacttgatttttgacaacttatctgatccccaatgtttccatacgtcttcta |
25358297 |
T |
|
| Q |
201 |
tatatat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
25358296 |
tatatat |
25358290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 25617393 - 25617063
Alignment:
| Q |
4 |
cggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagctt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||| | || |||||||||||||||| |||||||||||||| | ||| ||||||||| |
|
|
| T |
25617393 |
cggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgt---------cgtgcactcgaggctaacacgttggagctt |
25617303 |
T |
|
| Q |
104 |
cataaacaatgcccagaataatcgagaatagaatataaaataatgaacttgatttttgacaacttatctgctccccaatgtttccatacgtcttctatat |
203 |
Q |
| |
|
|| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
25617302 |
cacaaacaatgcccaacataattgagaataaaatataaaataatgaacttgatttttgacaacttatctgctccccattgtttccgtacgtcttttatat |
25617203 |
T |
|
| Q |
204 |
atatggtgcaagtggccacataatggaagaatttcctcacattactgttgccacgttctcatatcacaatcaatggtatatattgatggccataaacacc |
303 |
Q |
| |
|
|||| || ||||||||| | ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25617202 |
atata-tg---gtggccacacactggaagaatttccacacattaccgttgccaccttctcatatcacaatcaatgatatatattgatggccataaacacc |
25617107 |
T |
|
| Q |
304 |
caacggttggatactttgttttgcaacggtaggcaattaaaccaa |
348 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
25617106 |
caacggttggatac-ttgttttgcaacggtagacaattaaaccaa |
25617063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 128 - 278
Target Start/End: Complemental strand, 25494702 - 25494552
Alignment:
| Q |
128 |
agaatagaatataaaataatgaacttgatttttgacaacttatctgctccccaatgtttccatacgtcttctatatatatggtgcaagtggccacataat |
227 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25494702 |
agaatagaatataaaatgatgaacttgatttttgacaacttatctgctcccgaatgtttccatacgtcttctatatatatggtgcaagtggcgacataat |
25494603 |
T |
|
| Q |
228 |
ggaagaatttcctcacattactgttgccacgttctcatatcacaatcaatg |
278 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25494602 |
ggaagaatttcctcacattaccgttgccacgttctcatatcacaatcaatg |
25494552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 9229297 - 9229414
Alignment:
| Q |
9 |
gacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcga-ggccagcactttggagcttcata |
107 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||| ||||||||||||||| | | | |||||||||||||||| | ||| | ||| |||||||||| | |
|
|
| T |
9229297 |
gacctcagatgcaacccaatatccggttttgctctccaaggtttacacaattgcatgtctgaactcgtgcacttaagggcaaacacaatggagcttcaca |
9229396 |
T |
|
| Q |
108 |
aacaatgcccagaataat |
125 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
9229397 |
aacaatgtccagaataat |
9229414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 44300568 - 44300477
Alignment:
| Q |
25 |
caatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgccca |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||| |||| ||| ||||||| ||| |||| ||||||| |
|
|
| T |
44300568 |
caatatccagttttgctccccaaggtttacacaactagg--tctgaactcgtatactcgaagccaacacgttggagcctcacaaacgatgccca |
44300477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 8306 - 8499
Alignment:
| Q |
7 |
tggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcat |
106 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
8306 |
tggacctctggtgcaatttaatatccggttttgctccccaatgtttacacaactacgtgtctgaactcgtgcacttgaggctagcacgttggagcttcac |
8405 |
T |
|
| Q |
107 |
aaacaatgcccagaataatcgagaatagaatataaaataatgaacttgatttttgacaac---ttatctgctccccaatgtttccatacgtctt |
197 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
8406 |
aaacaatacccaaaataattgagaatagaatataaaataatgaacttgatttttgacaactaattatctgctccccactgtttccatacgtctt |
8499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 29360319 - 29360204
Alignment:
| Q |
1 |
tttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc-agcactttgga |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||| ||| |||||| ||||||||| |||||| | ||| |||| |
|
|
| T |
29360319 |
tttcggtggacctccggtgcaacccaatatccgattttgctcctcaaggtttacacaactgcgtgtctgaattcgtgcacttgaggccaaacacgatgga |
29360220 |
T |
|
| Q |
100 |
gcttcataaacaatgc |
115 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29360219 |
gcttcataaacaatgc |
29360204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 34249437 - 34249307
Alignment:
| Q |
1 |
tttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgag-gccagcactttgga |
99 |
Q |
| |
|
||||||||||||||| |||||| || ||||| ||||||||||||||| |||||| |||| | | |||||||||||||||||||| | | ||| |||| |
|
|
| T |
34249437 |
tttcggtggacctccagtgcaactcattatccagttttgctccccaagatttacataactgcatgtctgaactcgtgcactcgagatcaaacacgatgga |
34249338 |
T |
|
| Q |
100 |
gcttcataaacaatgcccagaataatcgaga |
130 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |
|
|
| T |
34249337 |
gcttcataaacaatgcccaaaataatagaga |
34249307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 1094457 - 1094573
Alignment:
| Q |
1 |
tttcggtggacctccgg-tgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc--agcactttg |
97 |
Q |
| |
|
|||||||||| |||||| ||||| |||| |||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||| | ||| || |
|
|
| T |
1094457 |
tttcggtggatctccgggtgcaacccaa-atccggttttgctccctaaggtttacacaactgcgtgtgtgaactcgtgcactcgaggcctgaacacgatg |
1094555 |
T |
|
| Q |
98 |
gagcttcataaacaatgc |
115 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
1094556 |
gagcttcacaaacaatgc |
1094573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1090699 - 1090785
Alignment:
| Q |
1 |
tttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc |
88 |
Q |
| |
|
||||| ||||||| | |||||| |||| |||||||||| ||||||||| ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
1090699 |
tttcgatggaccttcagtgcaacccaa-atccggttttactccccaagatttacacaactacgtgtctgaactcggacactcgaggcc |
1090785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 16098400 - 16098498
Alignment:
| Q |
4 |
cggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagct |
102 |
Q |
| |
|
||||||| |||| ||||||| ||||| |||||||||||| ||| |||||||||||||||| | ||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
16098400 |
cggtggatctccagtgcaattcaataaccggttttgctcttcaaagtttacacaactacgtgtgtgaactcgttcactcgaggccaacacgttggagct |
16098498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 32743621 - 32743736
Alignment:
| Q |
4 |
cggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc-agcactttggagct |
102 |
Q |
| |
|
||||||||||||| ||||||| ||| ||| | ||||||||||||||||||||||||| | | ||||||||| |||||| |||||| | ||| ||||||| |
|
|
| T |
32743621 |
cggtggacctccgatgcaatctaatttcctgatttgctccccaaggtttacacaactgcttgtctgaactcatgcacttgaggccaaacacgatggagct |
32743720 |
T |
|
| Q |
103 |
tcataaacaatgccca |
118 |
Q |
| |
|
||| ||||||| |||| |
|
|
| T |
32743721 |
tcacaaacaataccca |
32743736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 39777482 - 39777398
Alignment:
| Q |
1 |
tttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgagg |
86 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||| ||| | ||||| ||||||||||| |
|
|
| T |
39777482 |
tttcggtggacctccggtacaacccag-atccggttttgctccccaaagtttacacaactgcgtgtttgaacctatgcactcgagg |
39777398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 40709267 - 40709191
Alignment:
| Q |
13 |
tccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcca |
89 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||| ||| | | ||||||| | |||||||||||||| |
|
|
| T |
40709267 |
tccggtgcaacccaatatccggttttgctccccaaagtttacattactgcatgtctgaacccatgcactcgaggcca |
40709191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 3250 - 3324
Alignment:
| Q |
12 |
ctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgagg |
86 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||| ||||||||| |||| | ||| ||||||| ||||||||||||| |
|
|
| T |
3250 |
ctccggtgcaattcaatatccgattttactcctcaaggtttatacaatttcgtgtctgaacccgtgcactcgagg |
3324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 25080024 - 25080103
Alignment:
| Q |
7 |
tggacctccggtgcaatccaatatccgg-ttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgag |
85 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||| |||| ||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
25080024 |
tggacctccggtgcaacccaatacccgggtttttctccgtaaggtttacacaattgtgtgtctgaactcgtgcactcgag |
25080103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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