View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_44 (Length: 370)
Name: NF16904_low_44
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_44 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 14303547 - 14303906
Alignment:
| Q |
11 |
cacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtcccctttcttaatcaccaattccttaactcgcaaagcctca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303547 |
cacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtcccctttcttaatcaccaattccttaactcgcaaagcctca |
14303646 |
T |
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| Q |
111 |
ttctcatccatatcatcccaagaaaattccccatcttttatctccacagctacatcaccatcgcaattctcctctctttgcactgcattctcatccattt |
210 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
14303647 |
ttctcatccatatcatcccaagaaaatttcccatcttttatctccacagctacatcaccattacagttctcctctctttgcactgcattctcatccattt |
14303746 |
T |
|
| Q |
211 |
ccttactcatcatgaacttatccaacctccctaatgatattgttgcttgcgaaatattgataagagcctgtggaaaagtactcataggctcttgaagtat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303747 |
ccttactcatcatgaacttatccaacctccctaatgatatcgttgcttgcgaaatattgataagagcctgtggaaaagtactcataggctcttgaagtat |
14303846 |
T |
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| Q |
311 |
cttgatcactgaagttactgtgaaaacagtgccagcattcagaggaatcctcataaaagt |
370 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14303847 |
cttgatcactgcagttactgtgaaaacagtgccagcattcagaggaatccccataaaagt |
14303906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 14319938 - 14320285
Alignment:
| Q |
11 |
cacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtcccctttcttaatcaccaattccttaactcgcaaagcctca |
110 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||| || | ||| ||| |||||| |
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| T |
14319938 |
cacagaagccaataatgaagacttgcctgaaccaacagttcctacaatagcagcacggtcccctttcttaattaccaactcttccactgtcaacgcctca |
14320037 |
T |
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| Q |
111 |
ttctcatccatatcatcccaagaaaattccccatcttttatctccacagctacatcaccatcgcaattctcctctctttgcactgcattctcatccattt |
210 |
Q |
| |
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||||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14320038 |
ttctcatccttatcatcccatgaaaatttcccatcttttatctccacggctacatcaccatcacaattctcctctctttgcactgcattctcatccattt |
14320137 |
T |
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| Q |
211 |
ccttactcatcatgaacttatccaacctccctaatgatattgttgcttgcgaaatattgataagagcctgtggaaaagtactcataggctcttgaagtat |
310 |
Q |
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||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||| | |||||||| || || ||||| |||| |||||||||||| || |
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| T |
14320138 |
ccttactcaccatgaactcatccaacctccctaaagatattgttgcttgagaaatcattataagagcttgcgggaaagtcctcacaggctcttgaagaat |
14320237 |
T |
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| Q |
311 |
cttgatcactgaagttactgtgaaaacagtgccagcattcagaggaat |
358 |
Q |
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|||||| | ||||||| ||| || |||||||| ||||||| |||||| |
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| T |
14320238 |
cttgataatcgaagttattgtaaatacagtgccggcattcaaaggaat |
14320285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 14281789 - 14282134
Alignment:
| Q |
11 |
cacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtcccctttcttaatcaccaattccttaactcgcaaagcctca |
110 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| ||||| || | |||| ||| |||||| |
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| T |
14281789 |
cacagaagccaataatgaagacttgcccgatccaactgttcctacaatagcagcatggtcccctttcttaattaccaactcttcaactgtcaacgcctca |
14281888 |
T |
|
| Q |
111 |
ttctcatccatatcatcccaagaaaattccccatcttttatctccacagctacatcaccatcgcaattctcctctctttgcactgcattctcatccattt |
210 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||| ||||||||||| ||| | |||||||||| |
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| T |
14281889 |
ttctcatcgttatcatcccaagaaaatttcccatcttttatctccacagctacatcaccaccacaactctcatctctttgcacagcactatcatccattt |
14281988 |
T |
|
| Q |
211 |
ccttactcatcatgaacttatccaacctccctaatgatattgttgcttgcgaaatattgataagagcctgtggaaaagtactcataggctcttgaagtat |
310 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||||||| || ||||| |||| |||||||||||| || |
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| T |
14281989 |
ccttactcatcatgaactcatccaacctccctaaagatatagttgcttgagaaatattgataagagcctgagggaaagtcctcagaggctcttgaagaat |
14282088 |
T |
|
| Q |
311 |
cttgatcactgaagttactgtgaaaacagtgccagcattcagagga |
356 |
Q |
| |
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|||||| | ||||||| ||| ||||| ||||| || |||| |||| |
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| T |
14282089 |
cttgataatcgaagttattgtaaaaactgtgccggccttcaaagga |
14282134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 25884620 - 25884966
Alignment:
| Q |
11 |
cacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtcccctttcttaatcaccaattccttaactcgcaaagcctca |
110 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || | ||||| || ||| || |
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| T |
25884620 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
25884719 |
T |
|
| Q |
111 |
ttctcatccatatcatcccaagaaaattccccatcttttatctccacagctacatcaccatcgcaattctcctctctttgcactgcattctcatccattt |
210 |
Q |
| |
|
|||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
25884720 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
25884819 |
T |
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| Q |
211 |
ccttactcatcatgaacttatccaacctccctaatgatattgttgcttgcgaaatattgataagagcctgtggaaaagtactcataggctcttgaagtat |
310 |
Q |
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|||||||| ||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||||||| |||| ||||||||||||||| |
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| T |
25884820 |
ccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataagagcctgaggaaaagtcctcaaaggctcttgaagtat |
25884919 |
T |
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| Q |
311 |
cttgatcactgaagttactgtgaaaacagtgccagcattcagaggaa |
357 |
Q |
| |
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|||||| | ||||||| |||||||||||||||| ||||| ||||| |
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| T |
25884920 |
cttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaa |
25884966 |
T |
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