View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_46 (Length: 357)

Name: NF16904_low_46
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_46
NF16904_low_46
[»] chr5 (15 HSPs)
chr5 (8-346)||(30713225-30713563)
chr5 (8-346)||(30435784-30436122)
chr5 (21-347)||(30400055-30400381)
chr5 (24-346)||(29853295-29853617)
chr5 (21-352)||(30060350-30060681)
chr5 (21-352)||(30749624-30749955)
chr5 (23-346)||(30206505-30206828)
chr5 (20-304)||(30338364-30338648)
chr5 (12-304)||(30483376-30483668)
chr5 (99-346)||(29872233-29872480)
chr5 (23-336)||(30676978-30677291)
chr5 (23-304)||(30242214-30242495)
chr5 (18-341)||(30330936-30331259)
chr5 (23-160)||(17418149-17418286)
chr5 (134-346)||(17983001-17983213)
[»] chr7 (1 HSPs)
chr7 (8-304)||(26707303-26707599)
[»] chr4 (3 HSPs)
chr4 (23-347)||(20296381-20296705)
chr4 (170-343)||(52352088-52352262)
chr4 (243-305)||(13616800-13616862)
[»] chr1 (2 HSPs)
chr1 (105-346)||(7099486-7099727)
chr1 (167-346)||(7581519-7581698)
[»] chr3 (2 HSPs)
chr3 (242-346)||(25293724-25293828)
chr3 (29-68)||(25293947-25293986)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 30713563 - 30713225
Alignment:
Q  8 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30713563 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaatttttcagagtgaaaacttatgtggtgt 30713464  T
Q  108 gtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30713463 gtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaa 30713364  T
Q  208 aagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgt 307  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| ||| | |||||||||||||| |||      
T  30713363 aagaaatgtttccagaatattcatccatcttgcaatcttggaagaatgatttttggtacaattccttccaaaccatgtttccaacatcttcaacgtccaa 30713264  T
Q  308 attaaccctagatgaaatcaatccattagccatccaaag 346  Q
    |||| || |||||||||| ||||||||||||||||||||    
T  30713263 attacccatagatgaaataaatccattagccatccaaag 30713225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 30435784 - 30436122
Alignment:
Q  8 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30435784 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagttaaaacttatgtggtgt 30435883  T
Q  108 gtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |    
T  30435884 gtgttttttgtcaaattagtcatgtttgcattctccaaatacatacattctttccccgttactgattgagcgagatcatggacaagatcatgcatcttga 30435983  T
Q  208 aagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgt 307  Q
    ||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| ||  | |||||||||||||| |||      
T  30435984 aagaaatgtctccaaaatattcatccatcttgctatcttgaaagaatgatttttggtacaattccttccaaaccatttttccaacatcttcaacgtccaa 30436083  T
Q  308 attaaccctagatgaaatcaatccattagccatccaaag 346  Q
    |||| || |||||||||| ||| ||||||||||||||||    
T  30436084 attacccatagatgaaataaattcattagccatccaaag 30436122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 347
Target Start/End: Original strand, 30400055 - 30400381
Alignment:
Q  21 tcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtca 120  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||    
T  30400055 tcaaaccatgttcgcaaggattcaacttttctgaaggcaccctcatcgaatgataacaaattatcagagttaaaacttatgtggtgtgtgctttttgaca 30400154  T
Q  121 aattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttcc 220  Q
    || ||||||||||||||||||||||||| | |||||||| |||| ||||||| | ||||||||||||||||| ||||||||| || || ||| |||| ||    
T  30400155 aactagtcatgtttgcattctccaaatatatacattcttgccccattactgacttagcgagatcatggacaagatcatgcatcttgaatgaaatgttgcc 30400254  T
Q  221 agaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagat 320  Q
    |||| |||||||||| ||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  30400255 agaaaattcatccatttttttgtcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattaccccaagat 30400354  T
Q  321 gaaatcaatccattagccatccaaagc 347  Q
    |||||||||||||||||||||||||||    
T  30400355 gaaatcaatccattagccatccaaagc 30400381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 346
Target Start/End: Original strand, 29853295 - 29853617
Alignment:
Q  24 aacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaat 123  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||||||||     
T  29853295 aacaatgttcgcaaggattcaacttttttaaaggcaccctcatcgaatgataacaaattatcggagttaaaacttatgtggtgtgtgctttttgtcaaac 29853394  T
Q  124 tagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccaga 223  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| || ||| || ||| ||||||    
T  29853395 tagtcatgtttgcattctccaaatacacacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaaaaaatgtctccaga 29853494  T
Q  224 atattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagatgaa 323  Q
     |||||||||||||||  ||||||||||||||| |||||||||||||| | |||||| ||  | |||||||||||||| |||  |||| || ||||||||    
T  29853495 gtattcatccatcttgatatcttgaaagaatgacttttggtacaattccttccaaaccatatttccaacatcttcaacgtccaaattacccttagatgaa 29853594  T
Q  324 atcaatccattagccatccaaag 346  Q
    || ||||||||||||||||||||    
T  29853595 ataaatccattagccatccaaag 29853617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 352
Target Start/End: Original strand, 30060350 - 30060681
Alignment:
Q  21 tcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtca 120  Q
    |||||| ||||||| |||||||||||| ||||||| ||| |||  ||||| |||||| | | || |  || |||||| |||||||||||| |||||| ||    
T  30060350 tcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgaca 30060449  T
Q  121 aattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttcc 220  Q
    || |||||| |||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||  |||||||| || || ||| |||  ||    
T  30060450 aactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaaggtcatgcatcttgaatgaaatgtcgcc 30060549  T
Q  221 agaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagat 320  Q
    |||| |||||||||| || | |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||||||    
T  30060550 agaaaattcatccatttttctatcttgaaagaatgatttttggtacaattcatcccacaccatgatgccaacatcttcaacctccgtagtacccctagat 30060649  T
Q  321 gaaatcaatccattagccatccaaagccaaat 352  Q
    ||||||||||||||||||||||||||||||||    
T  30060650 gaaatcaatccattagccatccaaagccaaat 30060681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 21 - 352
Target Start/End: Original strand, 30749624 - 30749955
Alignment:
Q  21 tcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtca 120  Q
    |||||| ||||||| |||||||||||| ||||||| ||| |||  ||||| |||||| | |  | |  || |||||| || ||||||||| |||| | ||    
T  30749624 tcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtcgttattgtcaaaactaatatggtgtgtgcttttcgaca 30749723  T
Q  121 aattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttcc 220  Q
    || |||||| |||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||| |||||| || || || ||| |||  ||    
T  30749724 aactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgaatcttgaatgaaatgtcgcc 30749823  T
Q  221 agaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagat 320  Q
    |||| |||||||||| || | ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  30749824 agaaaattcatccatttttctatcttgaaagaatgatttttgatacaattcatcccaaaccatgatgccaacatcttcaacctccatattacccctagat 30749923  T
Q  321 gaaatcaatccattagccatccaaagccaaat 352  Q
    ||||||||||||||||||||||||||||||||    
T  30749924 gaaatcaatccattagccatccaaagccaaat 30749955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 23 - 346
Target Start/End: Original strand, 30206505 - 30206828
Alignment:
Q  23 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaa 122  Q
    |||||||||||  ||||||||||||||  ||||||||||||| |||||||||||||  |  ||| ||||||||||||||||||||||| |||||| ||||    
T  30206505 aaacaatgttctcaaggattcaactttcctgaaggcaccctcgtcgaatgataacacgtcatcatagtgaaaacttatgtggtgtgtgctttttgacaaa 30206604  T
Q  123 ttagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccag 222  Q
     |||||||||||| |||||||||||||| ||||||||  ||| ||||||||||||| ||||||||||||| ||||||||| || |||||| ||| |||||    
T  30206605 gtagtcatgtttgaattctccaaatacatacattcttgacccattactgattgagcaagatcatggacaagatcatgcatcttgaaagaaatgtctccag 30206704  T
Q  223 aatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagatga 322  Q
    ||   |  |||||||||   ||||||||||| ||||||||| ||||||||| |||||| ||| |||||||||||||||||||| ||||  |||||||| |    
T  30206705 aaccgttgtccatcttgatgtcttgaaagaaagatttttggcacaattcattccaaaccatgctgccaacatcttcaacctccatattttccctagataa 30206804  T
Q  323 aatcaatccattagccatccaaag 346  Q
    ||| ||| ||||||||||||||||    
T  30206805 aataaattcattagccatccaaag 30206828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 30338648 - 30338364
Alignment:
Q  20 gtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtc 119  Q
    ||||||||| ||||| |||||||||||||||||||| |||   |||||||| ||||| || || |    || |||||  |||||||||||| |||||| |    
T  30338648 gtcaaacaaagttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaagttgttgctgtcaaaaccaatgtggtgtgtgctttttgac 30338549  T
Q  120 aaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttc 219  Q
    ||||||||| |||||  |||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||| || |||||| ||| ||    
T  30338548 aaattagtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctc 30338449  T
Q  220 cagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctc 304  Q
    ||||||||||||||||||||| |||||||||||| ||||||| ||||||||| | |||||| ||| | |||||||||||||||||    
T  30338448 cagaatattcatccatcttgctatcttgaaagaacgattttttgtacaattccttccaaaccatgtttccaacatcttcaacctc 30338364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 30483376 - 30483668
Alignment:
Q  12 ttctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgt 111  Q
    |||| |||||||||||||||||| |||||||||||||||||||| |||   |||||||| ||||| || || |    || |||||  ||||||||||||     
T  30483376 ttcttcaagtcaaacaatgttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaatttcttgctgttaaaaccaatgtggtgtgtgc 30483475  T
Q  112 tttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaaga 211  Q
    |||||| |||||||||| |||||  |||||||||| ||  |||||||| |||| ||||||||||||||||||||||||||| ||||||||| || |||||    
T  30483476 tttttgacaaattagtcgtgtttttattctccaaacacgtacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaaga 30483575  T
Q  212 actgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctc 304  Q
    | ||| ||||||||||||||||||||||| |||||||||||| ||||||  ||||||||| | |||||| ||| | |||||||||||||||||    
T  30483576 aatgtctccagaatattcatccatcttgctatcttgaaagaacgattttctgtacaattccttccaaaccatgtttccaacatcttcaacctc 30483668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 99 - 346
Target Start/End: Original strand, 29872233 - 29872480
Alignment:
Q  99 atgtggtgtgtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcat 198  Q
    |||||||||||| |||||| |||| | |||||||||   |||||||||| || |||||||| |||| ||| ||||||||||||||||||||||| |||||    
T  29872233 atgtggtgtgtgctttttgacaaactggtcatgtttttgttctccaaatgcatacattcttgccccattattgattgagcgagatcatggacaagatcat 29872332  T
Q  199 gcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttc 298  Q
    |||| || |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| ||| | |||||||||||    
T  29872333 gcatcttgaaagaaatgtctccagaatattcatccatcttgccatcttgaaagaatgatttttggtacaattccttccaaaccatgtttccaacatcttc 29872432  T
Q  299 aacctccgtattaaccctagatgaaatcaatccattagccatccaaag 346  Q
    ||| |||  |||| || |||||||||| ||| ||||||||||||||||    
T  29872433 aacgtccaaattacccatagatgaaataaattcattagccatccaaag 29872480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 23 - 336
Target Start/End: Complemental strand, 30677291 - 30676978
Alignment:
Q  23 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaat-tttcagagtgaaaacttatgtggtgtgtgttttttgtcaa 121  Q
    |||||||||||  |||||||||||||||||||| |||  || ||| || |||||||| | ||| || || |||||  |||||||||||| |||||| |||    
T  30677291 aaacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataacaagtctttgag-gtcaaaaccaatgtggtgtgtgctttttgacaa 30677193  T
Q  122 attagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttcca 221  Q
    | | |||||||||   ||||||||||||| |||||||  |||| ||||| ||||||||||||||||||||| ||||||||| ||||||||| ||| ||||    
T  30677192 actggtcatgttttttttctccaaatacatacattctggccccattactaattgagcgagatcatggacaagatcatgcatcttaaaagaaatgtctcca 30677093  T
Q  222 gaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagatg 321  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||  || | |||||||| ||||| |||  |||| || ||||||    
T  30677092 gaatattcatccatctttctatcttgaaagaatgatttttggtacaattccttccaaaccgtgtttccaacatcatcaacgtccaaattacccatagatg 30676993  T
Q  322 aaatcaatccattag 336  Q
    |||| ||||||||||    
T  30676992 aaataaatccattag 30676978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 23 - 304
Target Start/End: Complemental strand, 30242495 - 30242214
Alignment:
Q  23 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaa 122  Q
    |||||||||||  |||||||||||||||||||| |||  || ||| || |||||||| | ||   ||| |||||  |||||||||||| |||||| ||||    
T  30242495 aaacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataacaagtctttgtagtcaaaaccaatgtggtgtgtgctttttgacaaa 30242396  T
Q  123 ttagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccag 222  Q
     | |||||||||   ||||||||||||| |||||||  |||| ||||||||||||||||||||||||||| ||||||||| || |||||| ||| |||||    
T  30242395 ctggtcatgtttttgttctccaaatacatacattctggccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccag 30242296  T
Q  223 aatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctc 304  Q
    ||||||||||||| ||||  |||||||| |||||||||||||||||||| | |||||| ||| | |||||||||||||||||    
T  30242295 aatattcatccattttgctgtcttgaaaaaatgatttttggtacaattccttccaaaccatgtttccaacatcttcaacctc 30242214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 30331259 - 30330936
Alignment:
Q  18 aagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttg 117  Q
    |||||| |||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| |  |||| |||||||||||| || ||| ||||||    
T  30331259 aagtcatacaatgttcgcaaggattcaacttttttgaaggcaccgtcatcgattgataacaaattattggagtcaaaacttatgtgatgggtgctttttg 30331160  T
Q  118 tcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtt 217  Q
    ||||| ||||||||||||||||||||| ||||| | ||| || | ||  || ||||||||| ||||||| || || |||| || | || |||||| |||     
T  30331159 tcaaactagtcatgtttgcattctccagatacatatattgttgctccagtattgattgagcaagatcattgaaaagatcacgcgtctttaaagaaatgtc 30331060  T
Q  218 tccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaacccta 317  Q
    |  |||||||||||  ||||||   |||| |||||||| ||||||| ||||| ||| |||| | ||| |  ||||||||   ||||||  ||||  ||||    
T  30331059 tttagaatattcatagatcttgatgtcttcaaagaatggtttttggcacaatccattccaagccatgctagcaacatctaggacctccaaattacgccta 30330960  T
Q  318 gatgaaatcaatccattagccatc 341  Q
    |||||||| ||||||| |||||||    
T  30330959 gatgaaataaatccatcagccatc 30330936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 17418286 - 17418149
Alignment:
Q  23 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaa 122  Q
    |||||||||||| |||||||||||||||||||||||| |||||| || ||||| | | |  ||||||||||||| ||||||||||||| |||||| ||||    
T  17418286 aaacaatgttcgcaaggattcaacttttttgaaggcatcctcattgagtgatagcgagtcatcagagtgaaaacatatgtggtgtgtgctttttgacaaa 17418187  T
Q  123 ttagtcatgtttgcattctccaaatacacacattcttt 160  Q
     || |||||||||||||||| ||||||| |||||||||    
T  17418186 ataatcatgtttgcattctctaaatacatacattcttt 17418149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 346
Target Start/End: Original strand, 17983001 - 17983213
Alignment:
Q  134 tgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccagaatattcatcc 233  Q
    ||||||||| |||  ||||||||| | ||||| |||||||||||| ||||||||||| | ||| |||||||| |||||| |    |  ||||| |||||     
T  17983001 tgcattctctaaaaccacacattcatgccccgctactgattgagcaagatcatggacgagatcgtgcattttgaaagaaatcacacttgaataatcatca 17983100  T
Q  234 atcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagatgaaatcaatccat 333  Q
    || | |   ||||||||||| ||||||||||||||||||| |||||  ||| ||||||||||||||||||||  |||    |||||||| || |||  ||    
T  17983101 atatggatgtcttgaaagaaagatttttggtacaattcattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgagataaatttat 17983200  T
Q  334 tagccatccaaag 346  Q
    |||||||||||||    
T  17983201 tagccatccaaag 17983213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 26707303 - 26707599
Alignment:
Q  8 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgt 107  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||| | || |||| ||||||||||||||||    
T  26707303 ataattcttcaagtcaaacaatgttcgcaaggattcaacttttttgaagataccctcatcgaatgataaaaaagtatcggagttaaaacttatgtggtgt 26707402  T
Q  108 gtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaa 207  Q
    ||| ||||||||||| || ||||||||||||||||||||||||  |||||||  ||| |||||||||||||||||||||||| || ||||||||| || |    
T  26707403 gtgctttttgtcaaactactcatgtttgcattctccaaatacatgcattcttgtcccattactgattgagcgagatcatggataagatcatgcatcttga 26707502  T
Q  208 aagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctc 304  Q
    ||||| ||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| | |||||| ||| | |||||||||||||||||    
T  26707503 aagaaatgtctccagaatattcacccatcttacagtcttgaaagaatgatttttggtacaattccttccaaaccatgtttccaacatcttcaacctc 26707599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 20296705 - 20296381
Alignment:
Q  23 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaa 122  Q
    |||||||||||| ||||||||||||| ||||||||||||||  | ||  |||||||| | |    ||| |||||  |||||||||||| ||  || ||||    
T  20296705 aaacaatgttcgcaaggattcaacttctttgaaggcacccttgttgatggataacaagtctgtgtagtcaaaaccaatgtggtgtgtgcttcgtgacaaa 20296606  T
Q  123 ttagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccag 222  Q
    ||||| | ||||  || ||||||||||| |||||||||||||  |||||| |||  ||||||||  |||| ||||||||| || ||| || | | || ||    
T  20296605 ttagtaacgtttttatcctccaaatacatacattctttccccactactgaatgaaggagatcataaacaagatcatgcatcttgaaataaatatctctag 20296506  T
Q  223 aatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagatga 322  Q
    |||||||||| || |||   ||||||||||||||||||||||||||||| | |||||| ||| | |||||||||||||| |||  |||| || |||||||    
T  20296505 aatattcatctattttgatttcttgaaagaatgatttttggtacaattccttccaaaccatgtttccaacatcttcaacgtccaaattacccatagatga 20296406  T
Q  323 aatcaatccattagccatccaaagc 347  Q
    ||| |||||||||||||||||||||    
T  20296405 aattaatccattagccatccaaagc 20296381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 343
Target Start/End: Original strand, 52352088 - 52352262
Alignment:
Q  170 tgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaat 269  Q
    ||||||||| |||||||| |||| ||||||||| || |||||| ||| |||  |||| ||||  ||||||   |||||||||||||| ||||||||||||    
T  52352088 tgattgagcaagatcatgtacaagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaat 52352187  T
Q  270 tcatcccaaactatgatgccaacatc-ttcaacctccgtattaaccctagatgaaatcaatccattagccatcca 343  Q
    |||| |||||  ||  ||||||| || ||| ||||||  |||  || |||| ||||| |||||||| ||||||||    
T  52352188 tcattccaaatcatattgccaacttctttctacctccaaattttccttagacgaaataaatccattggccatcca 52352262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 13616800 - 13616862
Alignment:
Q  243 tcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctcc 305  Q
    |||||||| || ||||||||||||||||||| |||||  ||| | ||||||||||||||||||    
T  13616800 tcttgaaaaaaagatttttggtacaattcattccaaatcatgtttccaacatcttcaacctcc 13616862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 105 - 346
Target Start/End: Original strand, 7099486 - 7099727
Alignment:
Q  105 tgtgtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattt 204  Q
    |||||| |||||| ||| |||||||  | |||||| || |||  || |||||||| ||||  |||||||||||| ||||||||||| | |||||||||||    
T  7099486 tgtgtgctttttgacaagttagtcacatatgcattatctaaaaccatacattcttgcccccctactgattgagcaagatcatggacgagatcatgcattt 7099585  T
Q  205 taaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctc 304  Q
    | |||||| |   ||  ||||| |||||||| | |   ||||||||||| ||||||||||||||||||| |||||  ||| | |||||||||||||||||    
T  7099586 tgaaagaaatcactcttgaataatcatccatatggatgtcttgaaagaaagatttttggtacaattcattccaaatcatgtttccaacatcttcaacctc 7099685  T
Q  305 cgtattaaccctagatgaaatcaatccattagccatccaaag 346  Q
    |  |||    ||||||||||| ||||||||||||||||||||    
T  7099686 caaattttttctagatgaaataaatccattagccatccaaag 7099727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 346
Target Start/End: Complemental strand, 7581698 - 7581519
Alignment:
Q  167 tactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtac 266  Q
    ||||||| |||| ||||||||||  | |||||||||||| |||||| ||| ||  ||||  |||||||| |     ||||||||||| || |||||| ||    
T  7581698 tactgatcgagcaagatcatggatgagatcatgcattttgaaagaaatgtctcttgaatcatcatccatatgaatgtcttgaaagaaagacttttggcac 7581599  T
Q  267 aattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagatgaaatcaatccattagccatccaaag 346  Q
    ||||||| |||||  ||| ||||||||||||||||||||  |||    ||||||||||| ||| ||||||||||||||||    
T  7581598 aattcattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaag 7581519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 25293828 - 25293724
Alignment:
Q  242 atcttgaaagaatgatttttggtacaattcatcccaaactatgatgccaacatcttcaacctccgtattaaccctagatgaaatcaatccattagccatc 341  Q
    |||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||  |||  ||||||||||||| |||||||||||||||    
T  25293828 atcttgaaagaatgatttttggcacaattcattccaaaccatgctgccaacatcttcaacctccaaattttccctagatgaaataaatccattagccatc 25293729  T
Q  342 caaag 346  Q
    |||||    
T  25293728 caaag 25293724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 25293986 - 25293947
Alignment:
Q  29 tgttcgtaaggattcaacttttttgaaggcaccctcatcg 68  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  25293986 tgttcgtaaggattcaacttttatgaaggaaccctcatcg 25293947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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