View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_49 (Length: 354)
Name: NF16904_low_49
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 5437245 - 5436921
Alignment:
| Q |
19 |
ataaagtggtggcctttcgctcaggggggtttggaagtgaaagttttcaatttgggtgataacatttggagagatattcaaagtttacccgtcattcctt |
118 |
Q |
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| T |
5437245 |
ataaagtggtggcctttcgcccaggggg-tttggaagtgaaagttttcaatttgggtgataacattcggagagatattcaaagtttacccgtcattcctt |
5437147 |
T |
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| Q |
119 |
attttgagataaatgagggtgtgtatttcagtggtagtattcattggttggcactttacaattactctcattctcgttatgaatgggcggattttactat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
5437146 |
attttgagataaatgagggtgtgtatttcagtggtagtattcattggttggcactttacaattactctcattctctttatgaatgggcgggtattactat |
5437047 |
T |
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| Q |
219 |
tgaccaatttgcgat---tatttcacttaatctgagtacggagacatacaataagttgctgctacttaggggttttaatgaagtgacacgtgaagtgcca |
315 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
5437046 |
tgaccaatttgcgattattatttcacttaatctgagtacggagacatacaataagttgctgctacctaggggtttcaatgaagtgacacgtgaagtgcca |
5436947 |
T |
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| Q |
316 |
attcttcgtgtgctaaacaaccacct |
341 |
Q |
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| T |
5436946 |
attcttcgtgtgctaaacaaccacct |
5436921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 332
Target Start/End: Original strand, 554159 - 554437
Alignment:
| Q |
55 |
gtgaaagttttcaatttgggtgataaca---tttggagagatattcaaagtttacccgtcattccttattttgagataaatgagggtgtgtatttcagtg |
151 |
Q |
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| T |
554159 |
gtgagagttttcaacttgggtgataattatttttggagagatattcaaaattcacctggggttcctttttctaagatgaattctggtgtgtacttgagtg |
554258 |
T |
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| Q |
152 |
gtagtattcattggttggcactttacaattactctcattctcgttatgaatgggcggattttactattgaccaatttgcgattatttcacttaatctgag |
251 |
Q |
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| T |
554259 |
gttgtattcattggttagcactttacaatta--ctcattctcgttataaatgggaggatattagtattggtcaaatttttattatttcgcttgatctgcg |
554356 |
T |
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| Q |
252 |
tacggagacatacaataagttgctgctacttaggggttttaatgaagtgacacgtgaagtgccaattcttcgtgtgctaaa |
332 |
Q |
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||| |||||||||| | ||||| |||||| |||||| ||||||||| ||||||||| ||||||||||||||| |||| |
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| T |
554357 |
tacagagacatacactgagttgatgctaccctcgggtttgaatgaagtgccacgtgaagcaccaattcttcgtgtgttaaa |
554437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 18921140 - 18921091
Alignment:
| Q |
55 |
gtgaaagttttcaatttgggtgataacatttggagagatattcaaagttt |
104 |
Q |
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| T |
18921140 |
gtgaaagttttcagtttgagtgataatgtttggagggatattcaaagttt |
18921091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 53774527 - 53774571
Alignment:
| Q |
58 |
aaagttttcaatttgggtgataacatttggagagatattcaaagt |
102 |
Q |
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| T |
53774527 |
aaagttttcactttgggtgatagtatttggagagatattcaaagt |
53774571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 17561145 - 17561110
Alignment:
| Q |
69 |
tttgggtgataacatttggagagatattcaaagttt |
104 |
Q |
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| T |
17561145 |
tttgggtgataacgtttggagagatattcaaagttt |
17561110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 22520639 - 22520601
Alignment:
| Q |
57 |
gaaagttttcaatttgggtgataacatttggagagatat |
95 |
Q |
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||||||||||| |||||||||||||||||||||| |||| |
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| T |
22520639 |
gaaagttttcagtttgggtgataacatttggagaaatat |
22520601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 24391074 - 24391123
Alignment:
| Q |
55 |
gtgaaagttttcaatttgggtgataacatttggagagatattcaaagttt |
104 |
Q |
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| T |
24391074 |
gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt |
24391123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 19351287 - 19351247
Alignment:
| Q |
223 |
caatttgcgattatttcacttaatctgagtacggagacata |
263 |
Q |
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||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
19351287 |
caatttgtgattatttcacttgatctgggtacggagacata |
19351247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 19351449 - 19351397
Alignment:
| Q |
55 |
gtgaaagttttcaatttgggtgataacatttggagagatattcaaagtttacc |
107 |
Q |
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||||||||||| | |||| ||||||| ||||||||||||||| ||||||||| |
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| T |
19351449 |
gtgaaagtttttagtttgagtgataatgtttggagagatattccaagtttacc |
19351397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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