View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_5 (Length: 675)
Name: NF16904_low_5
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 327 - 662
Target Start/End: Original strand, 10811970 - 10812295
Alignment:
| Q |
327 |
atactagacattacaatcatgcatgatattgcttctaatatttgtacttggttaatttggaataactggaacagagaaatatggttctgccattggtgca |
426 |
Q |
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| T |
10811970 |
atactagacattataatcatgcatgatattgctcctattattt----------aatttggaataactggaacagagaaatatggttctgccattggtgca |
10812059 |
T |
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| Q |
427 |
tcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaatgctttaaccttaattactatgtaaagaaaagatgttgcaatgt |
526 |
Q |
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| T |
10812060 |
tcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaattctttaaccttaattactatgtaaagaaaagatgttgcaatgt |
10812159 |
T |
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| Q |
527 |
aagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctatgttttgtacccttttcaagcgatgatcccttgtttttgtgttctttgaa |
626 |
Q |
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| T |
10812160 |
aagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctacgttttgtacccttttcaagcgatgatcccttatttttgtgttctttgaa |
10812259 |
T |
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| Q |
627 |
gttgctttcttcagggtagatgatgctattcttctc |
662 |
Q |
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| T |
10812260 |
gttgctttcttcagggtagatgatgctattcttctc |
10812295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 10811666 - 10811915
Alignment:
| Q |
18 |
tcaatttatttgagttgtgcaatttgctaaacacaaacagccacaatattgaggttaaccagcttttggcnnnnnnnnnnnnnnnnngttaccaatgta- |
116 |
Q |
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| T |
10811666 |
tcaatttatt-gagttgtgcaatttgctaaacacaaacagccacaatattgaggtgaaccagcttttggc---aacaaaataaaaaagttatcaatgtat |
10811761 |
T |
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| Q |
117 |
------tagcaccaaaataacactaatatatattttggttaaatattacattcaatacttcattacataaatatgtaattttactacaaaagtagggaac |
210 |
Q |
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| T |
10811762 |
ataatatagcaccaaaatattactaat----attttgtttaaatattacattcattacttcattacataaatatgtaattttacttcaaaagtagggaac |
10811857 |
T |
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| Q |
211 |
atttaagcaaatctgtgctaattaattactacaaaagttcacctcaaatttgatacta |
268 |
Q |
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| T |
10811858 |
atttaagcaaatctgtgctaattaattactacaaaagttcacctcaaatttgatacta |
10811915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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