View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_51 (Length: 349)

Name: NF16904_low_51
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_51
NF16904_low_51
[»] chr4 (5 HSPs)
chr4 (1-336)||(25497232-25497567)
chr4 (277-308)||(8469500-8469531)
chr4 (217-274)||(43932307-43932364)
chr4 (281-314)||(49619196-49619229)
chr4 (226-274)||(23339315-23339363)
[»] chr2 (3 HSPs)
chr2 (226-277)||(13869231-13869282)
chr2 (223-288)||(32098436-32098501)
chr2 (226-262)||(14316970-14317006)
[»] chr1 (6 HSPs)
chr1 (224-274)||(24263278-24263328)
chr1 (221-274)||(48133078-48133131)
chr1 (217-270)||(49365931-49365984)
chr1 (226-274)||(13975536-13975584)
chr1 (226-262)||(29794073-29794109)
chr1 (226-274)||(35590984-35591032)
[»] chr7 (4 HSPs)
chr7 (223-272)||(39505837-39505886)
chr7 (226-276)||(8680878-8680928)
chr7 (219-273)||(39591616-39591670)
chr7 (226-274)||(5010607-5010655)
[»] chr8 (5 HSPs)
chr8 (226-274)||(7008512-7008560)
chr8 (222-274)||(31884473-31884525)
chr8 (228-264)||(41871876-41871912)
chr8 (226-270)||(4558681-4558725)
chr8 (219-271)||(30043859-30043911)
[»] chr6 (3 HSPs)
chr6 (217-273)||(33828520-33828576)
chr6 (227-288)||(32917107-32917168)
chr6 (226-274)||(3155059-3155107)
[»] chr3 (3 HSPs)
chr3 (230-271)||(21862318-21862359)
chr3 (226-274)||(4013612-4013660)
chr3 (228-264)||(33965641-33965677)
[»] scaffold0508 (1 HSPs)
scaffold0508 (272-304)||(9902-9934)
[»] chr5 (4 HSPs)
chr5 (272-304)||(3951528-3951560)
chr5 (226-274)||(13244620-13244668)
chr5 (226-274)||(26516181-26516229)
chr5 (226-274)||(29115352-29115400)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 25497232 - 25497567
Alignment:
Q  1 gtaaacttctcactcgatgtacttttcctaggagtctggaacaccataaagtgaatcttgttaaaacataattgtttcttttactcaaaacacaaaagta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25497232 gtaaacttctcactcgatgtacttttcctaggagtctggaacaccataaagtgaatcttgttaaaacataattgtttcctttactcaaaacacaaaagta 25497331  T
Q  101 atgaaatacagacatgagacacaaaagttcagcatattattcaatcaataaaacatatttaacaaagaaaataaaggacatgaaatcaaatccaacaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25497332 atgaaatacagacatgagacacaaaagttcagcatattattcaatcaataaaacatatttaacaaagaaaataaaggacatgaaatcaaatccaacaagg 25497431  T
Q  201 cttgttcaaaaagacaaaggccctatttggataaacagatcaattaagcgcttatagcataaacgtttatcatagaataaatgcttatcatataagtgct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25497432 cttgttcaaaaagacaaaggccctatttggataaacagatcaattaagcgcttatagcataaacgtttatcatagaataaatgcttatcatataagtgct 25497531  T
Q  301 tatgcagaggctatctatagaagctataagctgttt 336  Q
    |||||||||||||||||||||||| |||||||||||    
T  25497532 tatgcagaggctatctatagaagcgataagctgttt 25497567  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 308
Target Start/End: Complemental strand, 8469531 - 8469500
Alignment:
Q  277 ataaatgcttatcatataagtgcttatgcaga 308  Q
    ||||||||||||||||||||||||||||||||    
T  8469531 ataaatgcttatcatataagtgcttatgcaga 8469500  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 43932307 - 43932364
Alignment:
Q  217 aaggccctatttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    |||| ||| ||||||||||||||| |||||||| |||||| |||||  ||||||||||    
T  43932307 aagggcctttttggataaacagattaattaagcacttataacataagtgtttatcata 43932364  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 49619229 - 49619196
Alignment:
Q  281 atgcttatcatataagtgcttatgcagaggctat 314  Q
    |||||||||||||||||||||||||| |||||||    
T  49619229 atgcttatcatataagtgcttatgcataggctat 49619196  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 23339363 - 23339315
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    |||||| |||||| ||||||||||| ||||||||||||  |||||||||    
T  23339363 tttggaaaaacagttcaattaagcgtttatagcataaatatttatcata 23339315  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 13869282 - 13869231
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcatagaa 277  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||||||    
T  13869282 tttggataaacagctcaattaagcgcttatagcataaacacttatcatagaa 13869231  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 32098501 - 32098436
Alignment:
Q  223 ctatttggataaacagatcaattaagcgcttatagcataaacgtttatcatagaataaatgcttat 288  Q
    |||||||||||||||  | | ||||| |||||||||||||||  |||||||| | |||||||||||    
T  32098501 ctatttggataaacaacttacttaagtgcttatagcataaacagttatcatatactaaatgcttat 32098436  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 14317006 - 14316970
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataa 262  Q
    |||||||||||| || |||||||||||||||||||||    
T  14317006 tttggataaacaaattaattaagcgcttatagcataa 14316970  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 24263328 - 24263278
Alignment:
Q  224 tatttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||| ||||    
T  24263328 tatttggataaacagtttaattaagtgcttatagcataaacgtttagcata 24263278  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 48133131 - 48133078
Alignment:
Q  221 ccctatttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    |||| |||||||| |||  | |||||||||||||||||||||||| ||||||||    
T  48133131 ccctgtttggatagacaacttaattaagcgcttatagcataaacgcttatcata 48133078  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 49365984 - 49365931
Alignment:
Q  217 aaggccctatttggataaacagatcaattaagcgcttatagcataaacgtttat 270  Q
    ||||| || ||||||||||||  | | |||||||||||||||||||||||||||    
T  49365984 aaggctctgtttggataaacaacttagttaagcgcttatagcataaacgtttat 49365931  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 13975536 - 13975584
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||||| |||| ||||| ||| |||||| |||||||||||    
T  13975536 tttggataaacagattaatttagcgcatatcgcataagcgtttatcata 13975584  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 29794109 - 29794073
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataa 262  Q
    ||||||||||||| | |||||||||||||||||||||    
T  29794109 tttggataaacagcttaattaagcgcttatagcataa 29794073  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 35591032 - 35590984
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||  |||||||||| |||||||| |||| ||||||||||    
T  35591032 tttggataaacacctcaattaagcacttatagcgtaaatgtttatcata 35590984  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 39505837 - 39505886
Alignment:
Q  223 ctatttggataaacagatcaattaagcgcttatagcataaacgtttatca 272  Q
    |||||||||||||||| ||||||||||  |||||||||||| ||||||||    
T  39505837 ctatttggataaacagctcaattaagcatttatagcataaatgtttatca 39505886  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 8680878 - 8680928
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcataga 276  Q
    ||||||||||||| |||||||| | ||||||||||| | ||||||||||||    
T  8680878 tttggataaacagctcaattaaacacttatagcatagatgtttatcataga 8680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 39591670 - 39591616
Alignment:
Q  219 ggccctatttggataaacagatcaattaagcgcttatagcataaacgtttatcat 273  Q
    |||||||||||||||||||||| |||||||| | |||||| ||| | ||||||||    
T  39591670 ggccctatttggataaacagatgaattaagctcgtatagcttaagcctttatcat 39591616  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 5010655 - 5010607
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||  | | ||||||||||||||||||||| |||||||||    
T  5010655 tttggataaacaatttatttaagcgcttatagcataaacatttatcata 5010607  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 7008512 - 7008560
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||  | ||||||||||||||||||||| |||||||||||    
T  7008512 tttggataaacaacttaattaagcgcttatagcataagcgtttatcata 7008560  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 31884473 - 31884525
Alignment:
Q  222 cctatttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||||||  |||||||||| |||||||||||| || ||||||||    
T  31884473 cctatttggataaacaactcaattaagcacttatagcataagcgcttatcata 31884525  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 41871876 - 41871912
Alignment:
Q  228 tggataaacagatcaattaagcgcttatagcataaac 264  Q
    ||||||||||||| |||||||||||||||||||||||    
T  41871876 tggataaacagattaattaagcgcttatagcataaac 41871912  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 4558681 - 4558725
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttat 270  Q
    ||||||||||||  | ||||| |||||||||||||||||||||||    
T  4558681 tttggataaacaacttaattacgcgcttatagcataaacgtttat 4558725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 30043911 - 30043859
Alignment:
Q  219 ggccctatttggataaacagatcaattaagcgcttatagcataaacgtttatc 271  Q
    |||||||||||| ||||||||| || |||| || |||||||||| ||||||||    
T  30043911 ggccctatttggttaaacagattaactaagtgcatatagcataagcgtttatc 30043859  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 33828520 - 33828576
Alignment:
Q  217 aaggccctatttggataaacagatcaattaagcgcttatagcataaacgtttatcat 273  Q
    |||||||| ||||||||||||| | || |||| |||||||||||||||| |||||||    
T  33828520 aaggccctgtttggataaacagtttaactaagtgcttatagcataaacgcttatcat 33828576  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 32917107 - 32917168
Alignment:
Q  227 ttggataaacagatcaattaagcgcttatagcataaacgtttatcatagaataaatgcttat 288  Q
    |||||||||||  | ||||||||||||||||| || ||||||||||||  |||| |||||||    
T  32917107 ttggataaacaacttaattaagcgcttatagcgtagacgtttatcatattataagtgcttat 32917168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 3155059 - 3155107
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||  | | ||||||||||||||||||| |||||||||||    
T  3155059 tttggataaacaacttatttaagcgcttatagcataagcgtttatcata 3155107  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 21862359 - 21862318
Alignment:
Q  230 gataaacagatcaattaagcgcttatagcataaacgtttatc 271  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  21862359 gataaacaactcaattaagcacttatagcataaacgtttatc 21862318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 4013660 - 4013612
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||||| |||| ||||| ||| |||||| |||||||||||    
T  4013660 tttggataaacagattaatttagcgcatatcgcataagcgtttatcata 4013612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 33965677 - 33965641
Alignment:
Q  228 tggataaacagatcaattaagcgcttatagcataaac 264  Q
    ||||||||||| | |||||||||||||||||||||||    
T  33965677 tggataaacagcttaattaagcgcttatagcataaac 33965641  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 9934 - 9902
Alignment:
Q  272 atagaataaatgcttatcatataagtgcttatg 304  Q
    ||||||||||||||||||||||| |||||||||    
T  9934 atagaataaatgcttatcatataggtgcttatg 9902  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 3951528 - 3951560
Alignment:
Q  272 atagaataaatgcttatcatataagtgcttatg 304  Q
    |||| ||||||||||||||||||||||||||||    
T  3951528 atagcataaatgcttatcatataagtgcttatg 3951560  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 13244668 - 13244620
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||| | |||| |||| |||||||||||||| ||||||||    
T  13244668 tttggataaacagttaaattgagcgtttatagcataaacgcttatcata 13244620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 26516181 - 26516229
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||  | ||||||||||||||||||||| || ||||||||    
T  26516181 tttggataaacaacttaattaagcgcttatagcataagcgcttatcata 26516229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 29115400 - 29115352
Alignment:
Q  226 tttggataaacagatcaattaagcgcttatagcataaacgtttatcata 274  Q
    ||||||||||||  | ||||| ||||||||||||||||| |||||||||    
T  29115400 tttggataaacactttaattacgcgcttatagcataaacatttatcata 29115352  T

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