View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_52 (Length: 348)
Name: NF16904_low_52
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 52070982 - 52070645
Alignment:
| Q |
1 |
acaaccttcattatttcacttcttttctcgaatccagtgaggatgtacttggagaatgaaattaaccactctagactttgtagttacaattagatgtcct |
100 |
Q |
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| T |
52070982 |
acaaccttcattattttacttcttttctcgaatccagtgaggatgtacttggagaatgaaattaaccactctagactttgtagttacaattagatgtcct |
52070883 |
T |
|
| Q |
101 |
tcttaaacatcctttttactcaattaaattagccactctaagctttttatttgtttattttgatttcgtgctactatccttcaataagtaaatatatatt |
200 |
Q |
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| T |
52070882 |
tcttaaacatcctttttactcaattaaattagccactctaagctttttatttgtttattttgatttcgtgctactatccttcaataagtaaatatatatt |
52070783 |
T |
|
| Q |
201 |
ctgcggtttaatattgctaccaccaatggttagtggttaccaaaaataataaaatagctaagatagtatgaagtctttcatttcatgtttgtggacttgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52070782 |
ttgcggtttaatattgctaccaccaatggttagtggttaccaaaaataataaaatagctaagatagtatgaagtctttcatttcatgtttgtggacttgg |
52070683 |
T |
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| Q |
301 |
aaatctcatggaacgatgtttaacgtattatatatttt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
52070682 |
aaatctcatggaacgatgtttaacgtattatatatttt |
52070645 |
T |
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