View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_55 (Length: 328)
Name: NF16904_low_55
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 54080691 - 54080954
Alignment:
| Q |
29 |
tagtggccatcatatgagtcgacatattgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatcc |
128 |
Q |
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| T |
54080691 |
tagtggccatcatatgagtcgacatattgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatcc |
54080790 |
T |
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| Q |
129 |
aaatccaaatatgccacgcaaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaacaagagcattcagca |
228 |
Q |
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| T |
54080791 |
aaatccaaatatgccacgcaaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaactagagcattcagcg |
54080890 |
T |
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| Q |
229 |
gctataa--atacttcaaaacctcttcagagtatcaacaacaaatacactgcataccctctaaa |
290 |
Q |
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| T |
54080891 |
gctataaatatacttcaaaacctcttcagagtatcaacaacaaatacactgcataccctctaaa |
54080954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 54084049 - 54084228
Alignment:
| Q |
30 |
agtggccatcatatgagtcgacatattgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatcca |
129 |
Q |
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|||||||||| ||||||||| ||| |||||||| ||||| |||||||||||| |||| ||| |||||||| | ||||||||||||||||| | |||||| |
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| T |
54084049 |
agtggccatcgtatgagtcggcat--tgtattggcacatgccataaatcatgccaatgagcaagttcaaggcgtttcaaccacaagtttttatccatcca |
54084146 |
T |
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| Q |
130 |
aatccaaatatgccacgcaaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaa |
211 |
Q |
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| T |
54084147 |
aattcaaatatgccacgccaatatgatctcctctactttctagcctcaaacttaaaataatcattccgcattttcacaccaa |
54084228 |
T |
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