View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_57 (Length: 321)
Name: NF16904_low_57
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 937804 - 937503
Alignment:
| Q |
1 |
actataactgacataaggaatgtgaaaaagatttccaatccccatccatagtacttatagtcttcaactaccggctttgaaaaatcaagtttcctataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937804 |
actataactgacataaggaatgtgaaaaagatttccaatccccatccatagtacttatagtcttcaactaccggctttgaaaaatcaagtttcctataat |
937705 |
T |
|
| Q |
101 |
aaggcaacagattcaactcatccttatggcgcttcaaccaaaccgcagcacaaacagacgtgattgtacacaatgcaacaagaaagaacgacaacataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937704 |
aaggcaacagattcaactcatccttatggcgcttcaaccaaaccgcagcacaaacagacgtgattgtacacaatgcaacaagaaagaacgacaacataat |
937605 |
T |
|
| Q |
201 |
gatttcataattcatccgcgtctctagtctacttctttttgatggagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937604 |
gatttcataattcatccgcgtctctagtctacttcttttcgatggagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaaca |
937505 |
T |
|
| Q |
301 |
cc |
302 |
Q |
| |
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|| |
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| T |
937504 |
cc |
937503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 16942288 - 16941987
Alignment:
| Q |
1 |
actataactgacataaggaatgtgaaaaagatttccaatccccatccatagtacttatagtcttcaactaccggctttgaaaaatcaagtttcctataat |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||| |||||||||||| || | ||| ||| || |||||||||||| | ||||||||||| |
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| T |
16942288 |
actataaccgacatgaggaatgtgaaaaggatttccactccccatccataatattgataactttcctcttttccctttgaaaaatccaatttcctataat |
16942189 |
T |
|
| Q |
101 |
aaggcaacagattcaactcatccttatggcgcttcaaccaaaccgcagcacaaacagacgtgattgtacacaatgcaacaagaaagaacgacaacataat |
200 |
Q |
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||||||| | ||||| |||| ||| | ||||| |||||||| ||||| ||||| || || | || |||||| || |||||||||||||| | ||| || |
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| T |
16942188 |
aaggcaatcggttcaattcattcttgtttcgctttaaccaaacagcagcgcaaactgaagtaactgaacacaaagctacaagaaagaacgaaagcatgat |
16942089 |
T |
|
| Q |
201 |
gatttcataattcatccgcgtctctagtctacttctttttgatggagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaaca |
300 |
Q |
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|| ||| | ||||| | || || || | || || || || ||||||||||| ||||| ||||||||||| ||||| || |||||||| || |||||| |
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| T |
16942088 |
tatctcagagttcatttgtgtttcaagacggctcctcttagacggagctcctgagttgttgagcatagcttttgtctcacgaccacaatacacggcaaca |
16941989 |
T |
|
| Q |
301 |
cc |
302 |
Q |
| |
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|| |
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|
| T |
16941988 |
cc |
16941987 |
T |
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