View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16904_low_58 (Length: 316)
Name: NF16904_low_58
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_58 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 28607010 - 28606747
Alignment:
| Q |
13 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607010 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
28606911 |
T |
|
| Q |
113 |
ttgtcatgatgaagtaacatatctgtgattaacttaaaagaaagtaccagcaaatttaagcccgatggaactaattgttgtttacaaagctaattggcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28606910 |
ttgtcatgatgaagtaacatatctgtgaataacttaaaagaaagtaccagcaaattta-------------taattgttgtttacaaagctaattggcat |
28606824 |
T |
|
| Q |
213 |
taacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcc |
289 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606823 |
taacgtaacggcaatcctttctaatttcaccttgatctccaataagaggattattctctgataacaattgaacagcc |
28606747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 28636619 - 28636532
Alignment:
| Q |
202 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcc |
289 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28636619 |
ctaattggcattaacgtatcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaattgaacagcc |
28636532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 28664189 - 28664102
Alignment:
| Q |
202 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28664189 |
ctaattggcattaacgtaacgacaatcctttcgaatttcaccttgatctccggtaagaggattattctccgataacaattgaacagcc |
28664102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 28657113 - 28657026
Alignment:
| Q |
202 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcc |
289 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
28657113 |
ctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaaaagaacagcc |
28657026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 48790495 - 48790528
Alignment:
| Q |
283 |
aacagccactacagaggcgaaaggctcactgaaa |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
48790495 |
aacagccacttcagaggcgaaaggctcactgaaa |
48790528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University