View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_6 (Length: 652)
Name: NF16904_low_6
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 13 - 590
Target Start/End: Original strand, 25496637 - 25497219
Alignment:
| Q |
13 |
aatatgaatgttgtatacttattgtgtgtgttgcatgtatttatcatgtcatgacagttgatttcaaatgagaataagcaacgaactgatgagtcgt--- |
109 |
Q |
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| T |
25496637 |
aatatgaatgttgtatacttattgtgtgtgttgtatgtatttatcatgtcatgacagttgatttcaaatgagaataagcaacgaactgatgagtcgtttc |
25496736 |
T |
|
| Q |
110 |
--aacagacagtatctttggacagttcttcattacttaaccgtgttaaaaaacatgccaatcaaaattacaggtgaagattgcatacaattttgacactc |
207 |
Q |
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| T |
25496737 |
gtaacagacagtatctttggacagttcttcattacttaaccgtgttaaaaaacatgccaatgaaaattacaggtgaagattgcatacaattttgacactc |
25496836 |
T |
|
| Q |
208 |
atttgcaagcataaatacttttgttggggagttcagagagcactggaagcaaccaactgactaatgatacaactaaaagaaaataaggtaaaacagaaaa |
307 |
Q |
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| T |
25496837 |
atttgcaagcataaatacttttgttggggagttcagagagcactggaagcaaccaactgactaatgatacaactaaaagaaaataaggtaaaacagaaaa |
25496936 |
T |
|
| Q |
308 |
aataaggagttataagacgatatataccctcccaagcttcgcaatagatgaagggagtgaagtccattgaacacttgcttctgtcacttttttactattt |
407 |
Q |
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| T |
25496937 |
aataaggagttataagacgatatataccctcccaagcttcgcaatagatgaagggagtgaagtccattgaacacttgcttctgtcacttttttactattt |
25497036 |
T |
|
| Q |
408 |
attgaaaccttgacaaagtttccaggaagtccggcttctgaagatttctttccaaaagagttccttggctttgttgttttttcttgttcttccataattc |
507 |
Q |
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| T |
25497037 |
attgaaaccttgacaaagtttccaggaagtccggcttctgaagatttctttccaaaagagttccttggctttgttgccttttcttgttcttccataattc |
25497136 |
T |
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| Q |
508 |
catcaccattaactttctttatagatttttgaatcttgttttcttccttagaggacttggttggtgtttgtgtcttattctca |
590 |
Q |
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| T |
25497137 |
catcaccattaactttctttatagatttttgaatcttgttttcttccttagaggacttggttggtgtttgtgtcttactctca |
25497219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 42467143 - 42467243
Alignment:
| Q |
339 |
ccaagcttcgcaatagatgaagggagtgaagtccattgaacacttgcttctgtcacttttttactatttattgaaaccttgacaaagtttccaggaagtc |
438 |
Q |
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|||||||| | |||||| || |||||||||||||| ||||||||||| |||||||||||| ||||| || ||||| ||||| | ||||||||| |||| |
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| T |
42467143 |
ccaagctttgaaatagacgacgggagtgaagtccactgaacacttgcatctgtcacttttctactacctaaagaaactttgaccatgtttccaggtagtc |
42467242 |
T |
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| Q |
439 |
c |
439 |
Q |
| |
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| |
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|
| T |
42467243 |
c |
42467243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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