View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16904_low_60 (Length: 315)
Name: NF16904_low_60
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 103 - 299
Target Start/End: Original strand, 11858469 - 11858674
Alignment:
| Q |
103 |
tattaagagagttgaaaaatgtagtgatcactacagatacgagataatagtgagcaacagtatcttcttcttccaccctaatta-cagagcactttccat |
201 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| | ||||||||||||| | ||||||||||||| |
|
|
| T |
11858469 |
tattaagagtgttgaaaaatgtagtgatcactacatatactagataatagtgagcaatggtatcttcaccatccaccctaattacctgagcactttccat |
11858568 |
T |
|
| Q |
202 |
ccaa-nnnnnnngaagattttcac-------acacaagaacaatggacgtagccatgatttcccattccatctctaagatcctacaatgtacaagctccc |
293 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
11858569 |
ccaattttttttgaagattttcacacacaaaacacaagaacaatggacgtagccatgctttcccattccatctccaacatcctacaatctacaagctccc |
11858668 |
T |
|
| Q |
294 |
taaaac |
299 |
Q |
| |
|
|||||| |
|
|
| T |
11858669 |
taaaac |
11858674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 11826420 - 11826485
Alignment:
| Q |
234 |
caatggacgtagccatgatttcccattccatctctaagatcctacaatgtacaagctccctaaaac |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || ||||||||||| | | ||||||||||| |
|
|
| T |
11826420 |
caatggacgtagccatgctttcccattccatctccaacatcctacaatggatgaactccctaaaac |
11826485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 12037421 - 12037468
Alignment:
| Q |
233 |
acaatggacgtagccatgatttcccattccatctctaagatcctacaa |
280 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || || |||||| |
|
|
| T |
12037421 |
acaatggacgtagccatgatttcccattcaatctccaacattctacaa |
12037468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 11857817 - 11857862
Alignment:
| Q |
10 |
ccccctaagttaaatttctggctctatccctagtctcgcggccgaa |
55 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||| |||||||| |
|
|
| T |
11857817 |
ccccctaagttaaatttctgactctgtccttagtctcacggccgaa |
11857862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University