View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_65 (Length: 300)
Name: NF16904_low_65
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_65 |
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| [»] scaffold0012 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 67 - 300
Target Start/End: Original strand, 181790 - 182021
Alignment:
| Q |
67 |
aacgcgcattctattcctctcacaatcagtgtttcgtttttcttcttctttcatgattcaaacgcgactgccgactactcaaacgtttcctccaactgca |
166 |
Q |
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| T |
181790 |
aacgcgcattccattcctctcaccatcagtgttttgtttttcttcttccttcatgattcaaacgcgactgccgactactcaaacgtttcctccaactgca |
181889 |
T |
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| Q |
167 |
tctctcacccaattcgatttctgaccataccatcatcatcatcaaccatcctattgacgttttcccctttccaaaataacactgacactattactccctt |
266 |
Q |
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| T |
181890 |
tctctcaaccaattcgatttctgaccataccatcatcatcatcgaccatcctattgacgtttt-ccctttccaaaataacactgacattattactccc-t |
181987 |
T |
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| Q |
267 |
taggtaaataacctctctttctttgatttctttt |
300 |
Q |
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| T |
181988 |
taggtaaataacctctctttctttgatttctttt |
182021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 62 - 300
Target Start/End: Complemental strand, 54578454 - 54578216
Alignment:
| Q |
62 |
ataccaacgcgcattctattcctctcacaatcagtgtttcgttt-ttcttcttctttcatgattcaaacgcgactgccgactactcaaacgtttcctcca |
160 |
Q |
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| T |
54578454 |
ataccaacgcgcgttccattcctctcaccatcagtgtttcgtttcttcttcttccttcatggttcaaacgcgactgccgattactcaaacgtttcctccg |
54578355 |
T |
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| Q |
161 |
actgcatctctcacccaattcgatttctgaccataccatcatcatcatcaaccatcctattgacgttttcccctttccaaaataacactgacactattac |
260 |
Q |
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| T |
54578354 |
attgcatctctcaaccaattcgatttctgaccataccatcatcatcatcgaccatcctattgacgttttccccttttcaaaacaacactgacactattac |
54578255 |
T |
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| Q |
261 |
tccctttaggtaaataacctctctttctttgatttctttt |
300 |
Q |
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| T |
54578254 |
t-ctgttaggtaaataacctctctttcgttgatttctttt |
54578216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 54578022 - 54577990
Alignment:
| Q |
223 |
acgttttcccctttccaaaataacactgacact |
255 |
Q |
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| T |
54578022 |
acgttttcccctttccaaaacaacactgacact |
54577990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 62 - 300
Target Start/End: Complemental strand, 38067321 - 38067084
Alignment:
| Q |
62 |
ataccaacgcgcattctattcctctcacaatcagtgtttcgtttttcttcttctttcatgattcaaacgcgactgccgactactcaaacgtttcctccaa |
161 |
Q |
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| T |
38067321 |
ataccaacgcgcgttccattcctctcaccatcaatttttcgtttttcttcttccttcatgattcaaacgcgattgtcgactactcaaacgtttcctctga |
38067222 |
T |
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| Q |
162 |
ctgcatctctcacccaattcgatttctgaccataccatcatcatcatcaaccatcctattgacgttttcccctttccaaaataacactgacactattact |
261 |
Q |
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| T |
38067221 |
ctgcatctctcaaccaattcgatttttgaccataccatcatcatcatcgaccatcctattgatgttttcccctttccaaaacaacactgacactgttact |
38067122 |
T |
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| Q |
262 |
ccctttaggtaaataacctctctttctttgatttctttt |
300 |
Q |
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||| |||||||||||||||||||||| ||||||| |||| |
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| T |
38067121 |
ccc-ttaggtaaataacctctctttcattgatttatttt |
38067084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 38066845 - 38066813
Alignment:
| Q |
223 |
acgttttcccctttccaaaataacactgacact |
255 |
Q |
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| T |
38066845 |
acgttttcccctttccaaaacaacactgacact |
38066813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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