View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_68 (Length: 296)
Name: NF16904_low_68
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 14861348 - 14861492
Alignment:
| Q |
12 |
catcatcatcggatctgtaattcaagcatcgcatagctttctctactctatgatcaaggccaattgagcaagccaggtgtttagagacctcttgaagaat |
111 |
Q |
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| T |
14861348 |
catcatcattggatctgtaattcaaacaacgcataactttctctactcgatgatcaaggccaattgagcaagccaggtgtttagagacctcttgaagaat |
14861447 |
T |
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| Q |
112 |
ctcctcaatgtactggtgttcatatatacccctggctctgcccaa |
156 |
Q |
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| T |
14861448 |
ctcctcaatgtactggtgttcatatatacccctggctctgcccaa |
14861492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 14795575 - 14795462
Alignment:
| Q |
41 |
cgcatagctttctctactctatgatcaaggccaattgagcaagccaggtgtttagagacctcttgaagaatctcctcaatgtactggtgttcatatatac |
140 |
Q |
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| T |
14795575 |
cgcataactttctctactcgatgatctaggccaattgagcaagcaacatgtttagagacctcttgaataatctcatatatgtaccggaattcatatatac |
14795476 |
T |
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| Q |
141 |
ccctggctctgccc |
154 |
Q |
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| T |
14795475 |
cccttgccctgccc |
14795462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 14802839 - 14802726
Alignment:
| Q |
41 |
cgcatagctttctctactctatgatcaaggccaattgagcaagccaggtgtttagagacctcttgaagaatctcctcaatgtactggtgttcatatatac |
140 |
Q |
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| T |
14802839 |
cgcataactttctctactcgatgatctaggccaattgagcaagcaacatgtttagagacctcttgaataatctcatatatgtaccggatttcatatatac |
14802740 |
T |
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| Q |
141 |
ccctggctctgccc |
154 |
Q |
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| T |
14802739 |
cccttgccctgccc |
14802726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 14844459 - 14844560
Alignment:
| Q |
41 |
cgcatagctttctctactctatgatcaaggccaattgagcaagccaggtgtttagagacctcttgaagaatctcctcaatgtactggtgttcatatatac |
140 |
Q |
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|||||| |||||||||||| |||||| ||||| ||||||||||| | ||||||||||||||||||| |||||| | ||||||||| ||||||||||| |
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| T |
14844459 |
cgcataactttctctactcgatgatctaggccgattgagcaagcaacatgtttagagacctcttgaataatctcatatatgtactggaattcatatatac |
14844558 |
T |
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| Q |
141 |
cc |
142 |
Q |
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|| |
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| T |
14844559 |
cc |
14844560 |
T |
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