View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_71 (Length: 288)
Name: NF16904_low_71
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 52988459 - 52988717
Alignment:
| Q |
1 |
catttagattcaaatcatgaaaatctgaacaacacttgttttcaatattatgcttctggactccatctcgactcttgtcgcagcttccttgatgacaatg |
100 |
Q |
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| T |
52988459 |
catttagattcaaatcatgaaaatctgaacaaaacttgttttcaatattatgcttctggactccatctcgactcttgtcgcagcttccttgatgacagtg |
52988558 |
T |
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| Q |
101 |
atcatgattctccatgtttttgagagggttaacatttccaattaaacttggatttgaagtgcaggatggattctttgaggagcatgactgggaggcacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52988559 |
atcatgattctccatgtttttgagagggttaacatttccaattaaacttggatttgaagtgcaggatggattctttgaggagcatgactgggaggcacac |
52988658 |
T |
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| Q |
201 |
ttctggggctgagctttttctgagcaacaatgcttatggctatgatgttgatgttgatg |
259 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
52988659 |
ttctggggctgagctttttctgagcaacaacgcttatggctatgatgttgatgctgatg |
52988717 |
T |
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