View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_74 (Length: 282)

Name: NF16904_low_74
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_74
NF16904_low_74
[»] chr3 (2 HSPs)
chr3 (19-273)||(51120197-51120451)
chr3 (111-145)||(51112886-51112920)
[»] chr5 (4 HSPs)
chr5 (100-144)||(41886292-41886336)
chr5 (98-140)||(41900191-41900233)
chr5 (102-140)||(32268880-32268918)
chr5 (19-47)||(28660967-28660995)
[»] chr2 (1 HSPs)
chr2 (98-145)||(45244521-45244568)
[»] chr4 (7 HSPs)
chr4 (102-140)||(566754-566792)
chr4 (102-137)||(1524000-1524035)
chr4 (98-145)||(1537246-1537293)
chr4 (98-140)||(1488824-1488866)
chr4 (99-140)||(12120920-12120961)
chr4 (98-134)||(554097-554133)
chr4 (98-154)||(645445-645501)
[»] chr1 (1 HSPs)
chr1 (98-154)||(9582031-9582087)
[»] chr6 (3 HSPs)
chr6 (98-145)||(9412450-9412497)
chr6 (99-139)||(6403935-6403975)
chr6 (99-139)||(6433172-6433212)
[»] chr8 (1 HSPs)
chr8 (98-140)||(17642614-17642656)
[»] chr7 (1 HSPs)
chr7 (103-140)||(10616209-10616246)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 51120451 - 51120197
Alignment:
Q  19 ggtgatagagaggaactgcttcgagacaacggatagacgtttcaagtagctgttgctgatgttaccgttgccatataggtgaggaatttgaagacacatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120451 ggtgatagagaggaactgcttcgagacaacggatagacgtttcaagtagctgttgctgatgttaccgttgccatataggtgaggaatttgaagacacatt 51120352  T
Q  119 cccaacagtcatcaggtaaatagaaatatgctgctgtaattgttgtcgtttttgtggaagaagaaaacaattgttgttgggaagatttgagagagttact 218  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120351 cccaacagtcatcaggtaaatagaaatatgctgctgtaatggttgtcgtttttgtggaagaagaaaacaattgttgttgggaagatttgagagagttact 51120252  T
Q  219 tctctttcttttcatattgacgtggttgctgccggtgacagttgtgctatctgtg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120251 tctctttcttttcatattgacgtggttgctgccggtgacagttgtgctatctgtg 51120197  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 51112920 - 51112886
Alignment:
Q  111 gacacattcccaacagtcatcaggtaaatagaaat 145  Q
    |||| ||||||||||||||||||||||||||||||    
T  51112920 gacatattcccaacagtcatcaggtaaatagaaat 51112886  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 41886336 - 41886292
Alignment:
Q  100 aggaatttgaagacacattcccaacagtcatcaggtaaatagaaa 144  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  41886336 aggaatttgaagacacattcccaacactcatcaggtaaatagaaa 41886292  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 41900233 - 41900191
Alignment:
Q  98 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 140  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  41900233 tgaggaatttgaagacacattcccaacactcatctggtaaata 41900191  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 32268880 - 32268918
Alignment:
Q  102 gaatttgaagacacattcccaacagtcatcaggtaaata 140  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  32268880 gaatttgaagacacattcccaacactcatctggtaaata 32268918  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 28660995 - 28660967
Alignment:
Q  19 ggtgatagagaggaactgcttcgagacaa 47  Q
    |||||||||||||||||||||||||||||    
T  28660995 ggtgatagagaggaactgcttcgagacaa 28660967  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 45244568 - 45244521
Alignment:
Q  98 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaat 145  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  45244568 tgaggaatttcaagacacattcccaacactcatcaggtaaatagaaat 45244521  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 566754 - 566792
Alignment:
Q  102 gaatttgaagacacattcccaacagtcatcaggtaaata 140  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  566754 gaatttgaagacacgttcccaacagtcatcaggtaaata 566792  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 1524035 - 1524000
Alignment:
Q  102 gaatttgaagacacattcccaacagtcatcaggtaa 137  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1524035 gaatttgaagacagattcccaacagtcatcaggtaa 1524000  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 1537293 - 1537246
Alignment:
Q  98 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaat 145  Q
    |||||||| |||| |||||||||||||| |||||||||||||| ||||    
T  1537293 tgaggaatctgaatacacattcccaacactcatcaggtaaatataaat 1537246  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 1488866 - 1488824
Alignment:
Q  98 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 140  Q
    |||||||||||| |||||||||||| || ||||||||||||||    
T  1488866 tgaggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 12120961 - 12120920
Alignment:
Q  99 gaggaatttgaagacacattcccaacagtcatcaggtaaata 140  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  12120961 gaggaatctgatgacacattcccaacactcatcaggtaaata 12120920  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 554097 - 554133
Alignment:
Q  98 tgaggaatttgaagacacattcccaacagtcatcagg 134  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  554097 tgaggaatttgaagacaaattcccaacattcatcagg 554133  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 645445 - 645501
Alignment:
Q  98 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaatatgctgctg 154  Q
    |||||||| ||||||||||| ||||||| |||| ||||||||| |||| ||| ||||    
T  645445 tgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctgcagctg 645501  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 9582031 - 9582087
Alignment:
Q  98 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaatatgctgctg 154  Q
    ||||||||||||||||  ||||||||||||||| ||||||||| |||| || |||||    
T  9582031 tgaggaatttgaagacggattcccaacagtcattaggtaaataaaaatctgttgctg 9582087  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 9412450 - 9412497
Alignment:
Q  98 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaat 145  Q
    ||||||||||||||| || ||||||||| |||||||||||||| ||||    
T  9412450 tgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat 9412497  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 6403935 - 6403975
Alignment:
Q  99 gaggaatttgaagacacattcccaacagtcatcaggtaaat 139  Q
    ||||||||||||||| |||||||| ||||||||||| ||||    
T  6403935 gaggaatttgaagacgcattcccatcagtcatcaggcaaat 6403975  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 6433172 - 6433212
Alignment:
Q  99 gaggaatttgaagacacattcccaacagtcatcaggtaaat 139  Q
    ||||||| ||||||  |||||||||||||||||||||||||    
T  6433172 gaggaatctgaagatgcattcccaacagtcatcaggtaaat 6433212  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 17642656 - 17642614
Alignment:
Q  98 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 140  Q
    ||||||||||||||||| | |||||||| ||||||||||||||    
T  17642656 tgaggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 10616209 - 10616246
Alignment:
Q  103 aatttgaagacacattcccaacagtcatcaggtaaata 140  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaata 10616246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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