View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_76 (Length: 275)
Name: NF16904_low_76
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 54 - 267
Target Start/End: Original strand, 15852985 - 15853200
Alignment:
| Q |
54 |
tttgaaagaaaaa-cat-aagacatggaactttcaatgcaagaggatcagaaaacttcctatacgagaaaaataaaggatgaactaagcatatcagaaaa |
151 |
Q |
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| T |
15852985 |
tttgaaagaaaaaacattaagacatggaactttcaatgcaagatgatcagaaaacttcctatatgagaaaaataaaggatgaactaagcatatcagaaaa |
15853084 |
T |
|
| Q |
152 |
agaatagaaatccccacaaagtgtctacattgcctggcataaacaaaacattcagacaaagcatgtgattgtgatcaattaaactcaatagttaaccttg |
251 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||| ||| |||| |||||| |
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| T |
15853085 |
agaatagaaatccccacaaagagtctacattgcctggcatacacaaaatattcagacaaagcatgtgactgtgatcaacaaaacccaacagttcaccttg |
15853184 |
T |
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| Q |
252 |
gcacgaagttcatctc |
267 |
Q |
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|||||||||||||||| |
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| T |
15853185 |
gcacgaagttcatctc |
15853200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 267
Target Start/End: Complemental strand, 47432816 - 47432626
Alignment:
| Q |
78 |
gaactttcaatgcaagaggatcagaaaacttcctatacgagaaaaataaaggatgaactaagcatatcagaaaaagaatagaaatccccacaaa-gtgtc |
176 |
Q |
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|||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| | ||| |
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| T |
47432816 |
gaactttcaacgcaggaggatcagaaaacctcctatatgagaaaaataaaggatgaactaagcatatcagaaaaagaatacacatcaccacaaaggagtc |
47432717 |
T |
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| Q |
177 |
tacattgcctggcataaacaaaacattcagacaaagcatgtgattgtgatcaattaaactcaatagttaaccttggcacgaagttcatctc |
267 |
Q |
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| T |
47432716 |
tgcattgctcggcatatacaaaacattcagacaaagcatgtgattatgatcaacgaaacccaatagttaaccttggtaagaagttcatctc |
47432626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 10693111 - 10693018
Alignment:
| Q |
174 |
gtctacattgcctggcataaacaaaacattcagacaaagcatgtgattgtgatcaattaaactcaatagttaaccttggcacgaagttcatctc |
267 |
Q |
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||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||||| |||||||||||| |
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| T |
10693111 |
gtctacattgctcggcatatacaaaacattcagacaacgcatgtgattatgatcaacaaaacccaatagttaaccttggccagaagttcatctc |
10693018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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