View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_low_79 (Length: 267)
Name: NF16904_low_79
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 50463861 - 50464114
Alignment:
| Q |
1 |
caaatttttctttcccatattgtttgtgaagagagggtgggttctatgagttg---ttgtgttaggagagttttcgtgtttgtaataaatttgatgagaa |
97 |
Q |
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| T |
50463861 |
caaatttttctttcccatattgtttgtgaagagagggtgggttctatgagttgttgttgtgttaggagagtattcgtgtttgtaataaatttgatgagaa |
50463960 |
T |
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| Q |
98 |
atgagttatttaaagcacaggattgtgatatgaagcaaaagaatatgacaaggaaatggggtctggtaggtgctttcatgtgtgaatttaatttgtaggt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463961 |
atgagttatttaaagcacaggattgtgatatgaagcaaaagaatatgacaaggaaatggggtctggtaggtgctttcatgtgtgaatttaatttgtaggt |
50464060 |
T |
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| Q |
198 |
tagtaaagttcaatgttattcaatgcacgcatcaacaactgaatgtaacagcac |
251 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50464061 |
tagtaaaattcaatgttattcaatgcacgcatcaacaactgaatgtaacagcac |
50464114 |
T |
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