View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_low_8 (Length: 601)

Name: NF16904_low_8
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_low_8
NF16904_low_8
[»] chr2 (2 HSPs)
chr2 (61-584)||(33815400-33815923)
chr2 (101-136)||(32271385-32271420)
[»] chr8 (2 HSPs)
chr8 (101-136)||(21634847-21634882)
chr8 (101-133)||(5515537-5515569)
[»] chr7 (8 HSPs)
chr7 (101-136)||(32089306-32089341)
chr7 (101-136)||(32093063-32093098)
chr7 (101-136)||(32096779-32096814)
chr7 (101-136)||(39128533-39128568)
chr7 (101-136)||(39478477-39478512)
chr7 (101-136)||(41706670-41706705)
chr7 (101-136)||(41812181-41812216)
chr7 (338-391)||(24177714-24177767)
[»] chr6 (2 HSPs)
chr6 (101-136)||(26217275-26217310)
chr6 (101-135)||(11187926-11187960)
[»] chr5 (1 HSPs)
chr5 (336-403)||(38683975-38684042)
[»] chr3 (3 HSPs)
chr3 (101-136)||(38044562-38044597)
chr3 (101-136)||(48838007-48838042)
chr3 (101-136)||(50152374-50152409)
[»] chr1 (2 HSPs)
chr1 (101-136)||(31141989-31142024)
chr1 (340-403)||(51234326-51234389)
[»] chr4 (2 HSPs)
chr4 (102-136)||(7772341-7772375)
chr4 (102-136)||(7777949-7777983)


Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 61 - 584
Target Start/End: Original strand, 33815400 - 33815923
Alignment:
Q  61 ggaccgtatcttaatatgtgcgtgtcatcctcgatgaggaggccatgctaatcttctttgtatcgttccaattttacctcaaagaaacatttgtttgtgg 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33815400 ggaccgtatcttaatatgtgcgtgtcatcctcgatgaggaggccatgctaatcttcttcgtatcgttccaattttacctcaaagaaacatttgtttgtgg 33815499  T
Q  161 agtgtgcacattatacacacactaaatatgtggaaagattaagcaatgtggaacttctgcgacaactaagaaacaacatgcaccgcaacttaccaaatta 260  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815500 agtgtgcacattatatacacactaaatatgtggaaagattaagcaatgtggaacttctgcgacaactaagaaacaacatgcaccgcaacttaccaaatta 33815599  T
Q  261 ttcatttgagctcttatattatttgaacgactctaacttttcaacactcatttaacaccttccctnnnnnnnncacttacaaaacgacggagaaatggaa 360  Q
    ||||||||||||||||   |||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  33815600 ttcatttgagctctta---tatttggacgactctaacttttcaacactcatttaacaccttccctataaaaaacacttacaaaacgacggagaaatggaa 33815696  T
Q  361 gtagatgcaaatcatcaaatttaagtt---gggtgattcaaatggaaaaggtgtgcttctaagaggtaacctatagtttccccacttaaacctatcctaa 457  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815697 gtagatgcaaatcatcaaatttaagttggggggtgattcaaatggaaaaggtgtgcttctaagaggtaacctatagtttccccacttaaacctatcctaa 33815796  T
Q  458 ggtgtgcttaggatcttgaatgcatgttattcattgttgcattttgaatctatagtgttttgatgtaataaagcatggcagcagctttgtgttttatggt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33815797 ggtgtgcttaggatcttgaatgcatgttattcattgttgcattttgaatctatagtgttttgatgtaataatgcatggcagcagctttgtgttttatggt 33815896  T
Q  558 gtttgattgcgatgaaactatgctatt 584  Q
    |||||||||||||||||||||||||||    
T  33815897 gtttgattgcgatgaaactatgctatt 33815923  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 32271385 - 32271420
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||| ||||||||||||||||||||||||||||    
T  32271385 ggccatgataatcttctttgtatcgttccaatttta 32271420  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 21634847 - 21634882
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21634847 ggccatgctaatcttctctgtatcgttccaatttta 21634882  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 5515569 - 5515537
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatt 133  Q
    ||||||||||||||||| |||||||||||||||    
T  5515569 ggccatgctaatcttctctgtatcgttccaatt 5515537  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 32089306 - 32089341
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32089306 ggccatgctaatcttctctgtatcgttccaatttta 32089341  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 32093063 - 32093098
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32093063 ggccatgctaatcttctctgtatcgttccaatttta 32093098  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 32096779 - 32096814
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32096779 ggccatgctaatcttctctgtatcgttccaatttta 32096814  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 39128533 - 39128568
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  39128533 ggccatgctaatcttctctgtatcgttccaatttta 39128568  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Complemental strand, 39478512 - 39478477
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  39478512 ggccatgctaatcttctctgtatcgttccaatttta 39478477  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 41706670 - 41706705
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  41706670 ggccatgctaatcttctctgtatcgttccaatttta 41706705  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Complemental strand, 41812216 - 41812181
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  41812216 ggccatgctaatcttctctgtatcgttccaatttta 41812181  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 24177767 - 24177714
Alignment:
Q  338 tacaaaacgacggagaaatggaagtagatgcaaatcatcaaatttaagttgggt 391  Q
    ||||||| ||||||||||| |||| ||||| ||||||||| ||| |||||||||    
T  24177767 tacaaaatgacggagaaatagaagcagatgtaaatcatcatattcaagttgggt 24177714  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 26217275 - 26217310
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26217275 ggccatgctaatcttctctgtatcgttccaatttta 26217310  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 11187960 - 11187926
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttt 135  Q
    ||||||||||||||||| |||||||||||||||||    
T  11187960 ggccatgctaatcttctctgtatcgttccaatttt 11187926  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 38683975 - 38684042
Alignment:
Q  336 cttacaaaacgacggagaaatggaagtagatgcaaatcatcaaatttaagttgggtgattcaaatgga 403  Q
    |||||||||||||||||||||  ||| ||||| ||| ||||||| | |||||||||| || |||||||    
T  38683975 cttacaaaacgacggagaaattaaaggagatgaaaaccatcaaaatcaagttgggtgcttgaaatgga 38684042  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 38044562 - 38044597
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  38044562 ggccatgctaatcttctctgtatcgttccaatttta 38044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Complemental strand, 48838042 - 48838007
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48838042 ggccatgctaatcttctctgtatcgttccaatttta 48838007  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Complemental strand, 50152409 - 50152374
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  50152409 ggccatgctaatcttctctgtatcgttccaatttta 50152374  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 31141989 - 31142024
Alignment:
Q  101 ggccatgctaatcttctttgtatcgttccaatttta 136  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31141989 ggccatgctaatcttctctgtatcgttccaatttta 31142024  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 51234326 - 51234389
Alignment:
Q  340 caaaacgacggagaaatggaagtagatgcaaatcatcaaatttaagttgggtgattcaaatgga 403  Q
    ||||| || |||||||| |||| ||||| ||||||||||||| |||||||||| || |||||||    
T  51234326 caaaatgatggagaaattgaagcagatgtaaatcatcaaattcaagttgggtggttgaaatgga 51234389  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 7772341 - 7772375
Alignment:
Q  102 gccatgctaatcttctttgtatcgttccaatttta 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  7772341 gccatgctaatcttctctgtatcgttccaatttta 7772375  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 7777949 - 7777983
Alignment:
Q  102 gccatgctaatcttctttgtatcgttccaatttta 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  7777949 gccatgctaatcttctctgtatcgttccaatttta 7777983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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